RNA id: TU923920


Basic Information

Item Value
RNA id TU923920
length 2804
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G812101
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48029315 ~ 48032118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtgtaattaataacttcaccatgctcaaagggatattcaatgtctgttcaATGTCttttatctaccaataggtacccttctttgcGAACCAATGGAAAACctcactggtctttgtggttaaatctgtgctTAAAATTCACTCCCCGACTAAGGAaccttgcagataattgtatgtgtggggtacagaggtggGGTCATTTATACAAAAAAAATCATTATTGCACagagtccatacaacttattatgtgacttgttcagcgcatttttacacctgaacttatttaggcttgccataacaaaagggttgaatacttattgactcaagacatttcagcttttcatttttaattaatttgtaaacatttcttaaaacttcattccactttgacattatggggtattgtgtgtaggcacaaaatctctatttaatccattctaaattcaggctgtaacacaacaaaatgtagaaaaagtcaaggagtgtgaatactttttgaagcaTTTCAGCCCCCCAAACTCATTTCATTATACAAATAGTCACATTTAATCTTGCCTGACTTAGCATTCCAAATAAATTGAACTATTTTTGGCTCATATGGTTTAAAAAACAAGTTGTCTGGTGTGGGTACTGCTATAAataaataggtaaactgtgatatgaagAAAGAGTTAACCAGGGTGATTTTTCCATaaagacaggtatttacctctccatggttgaaggatcttgtctatttttgttAACTTTCTATATCAATTTGTTATGGTAAGTTCATTTATATATTTTGGGATATGAATACCAGTATACCTACATCCCCAACagcccattttattggtaaactacaggGTCATGTGAAAGTTGTGTCTTTTAAAGATCCTGTATATAATATGGTACACATAATGGTACACTCATAATCGTGTTTTAATCCGGAGGCTAGAGAAGGGATCTTCAAAGAGACCATGCAGAGATCCAGATTGCGGACTTAAGTTAAGAGGAAACTTGACACTTTTGTTTTTAATAATATGAATATTAATACAGTATCTTTACACATACATTCAAACTATATATTTGATTCATTCATCTCTTATTCCCACTATCTCTCTTATCCTCCCCTTTCTTGATCTCAGGAATAAACAACTTGTAACCTGTGACACAGATCCTGCTGATCGGCTGGAAGGAGAAAAGGAAAGGAGACCCCCAGGTCtgggaggtggaaggagaggtcAAACAGTAGCCCTCTTCTCCTGCAGCCTGTGAGGCCCACTGTGCTACTGGTCCAACATCAGTCTTGAGTATATATTGCCATGGAGCTGTCGCATAATGATAGAAGGTCGCAGGGCTAAAGTCTGCTGCAACGCCAGTGAGAGCGATGGGCCAATGGCACTCATTGATTCAGCCATGCCATACCCCCCAGACAGGAGACACTCTGATCTGAACACCTTGGACTATCTGCTGCTCTTCTCCGCTATGGAGATTTACCACAACACAGTGCCTTTAAGAGCTGAGGGGAGTTGGGGATGGATGGGTTTACTGGGTTTACtgcatttgtgcgtgtgtgcgtgtactgtacgtgtgtggttgtgtgtagaGGGAATGAATGCATGAGGAGGCTGCGTATGCAACAGTGTTTTAACGTGCCTCTAATCTATTATCATCTACTGTTGCTGTTGTGTCAAATCTTGAATGAGGAAGAAAAATCTAAGATAACAGAGTGATGTTGTGTTGCATTGACATGTATGGAGGTTGCACTGCAAGATTACCATGTACATTTCTGTGAATATTTATTTTGTACCATCACCGTCTTTGTGATTTACTGTACCAATGCATTTACCATATCCAATTATGTTGGAAGTTAATTTAATGTCCTTACTGTATGGGTCCTCATGTACTATGAAATGTGTTATGAATTGTTGAATATTCAATGTGAATGAAAACTATTCAAGTTCAGGCTCAGTGGTTTTGAGTTGTTTCCCATAGTGACATTAAGTGCTGAGTGGGAATGTACTGTATCATTCAGCTGTACCTACTGTAAGTAGCCAGATACACAGGTGTACTGTGTAGCAAAACCTTCCTTATTAGGCCAAAAGTTGACCCCAAAGCAAAGGCAACAGTCCCCCAATGACAGATACCCCTAATTGTGGCACTATTGTGAGACCAGTCACTGATCGAGACAGGAATATATGGGGGTTCCACAGACAGCATTCATCTTCCCTTTCCCATTGCACCTTTTATTTTGAGGGCATACTGTAGTCTTCTAGTTTATCAACACCATTGAATGCTGTGTTTACTGTGTTACACCCGTGATTTATTCAGCATCACTATGCCATTTaaaacagtacagtatgttgaaCATCTTGTGCCCCCTGTTTACCAGGGTTTGGGTCAATTATATTTCacttccagtcaattcagaaagtaaaccaaattctactacttcctgaattgactggaatttaaatggaactgaccccaacccctctttttaccacAAGCAAGGTCAGAACAGTGAGTAACTCAACTACTCAGCCATTTAAGAAAAACACAAACATGCAGAGCATACAACTCCATGTAAGCTTCAATGGGAATTGAGACAGTCACCTTATCATGGATCAAATGTGACCAGTTACTGTGTGGTATTCTCTTTTTCTAGTAGTTAGTGACGTTGTTTTGTGTATGTTAATCAGTTGTCATAAGGCCCTGAATGGGGACAAAAAGCACATTGGAGACATGTCTtagaaatgcaaaactgatatTGGAATTGGGCAAGGAATTTGAATTGAGCTGTTTTTTTAACTAATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU923922 lncRNA upstream 1328 48027529 ~ 48027987 (+) True G812103
TU923921 lncRNA upstream 3136 48024222 ~ 48026179 (+) True G812102
TU923946 lncRNA upstream 68568 47960522 ~ 47960747 (+) True G812127
TU923945 lncRNA upstream 69096 47959996 ~ 47960219 (+) True G812126
TU923929 lncRNA upstream 96609 47932176 ~ 47932706 (+) True G812110
TU924208 lncRNA downstream 246059 48278177 ~ 48284725 (+) False G812382
TU924209 lncRNA downstream 246059 48278177 ~ 48286426 (+) False G812382
TU924210 lncRNA downstream 246059 48278177 ~ 48281763 (+) True G812382
TU924400 lncRNA downstream 297478 48329596 ~ 48329827 (+) True G812555
TU924464 lncRNA downstream 394166 48426284 ~ 48435659 (+) True G812613
XM_036988191.1 mRNA upstream 6125 47986339 ~ 48023190 (+) False LOC110532248
XM_021615974.2 mRNA downstream 72214 48104332 ~ 48158964 (+) True ntsr1
XM_021615978.2 mRNA downstream 192529 48224647 ~ 48259337 (+) False snphb
XM_036988194.1 mRNA downstream 204598 48236716 ~ 48259337 (+) True snphb
XM_021615992.2 mRNA downstream 354649 48386767 ~ 48394099 (+) True LOC110532257
XM_021615993.2 mRNA downstream 368519 48400637 ~ 48404003 (+) True LOC110532258
TU923963 other upstream 47014 47982001 ~ 47982301 (+) True G812143
TU921250 other upstream 1893583 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 3576238 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 3833274 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 5680529 42346176 ~ 42348786 (+) True G805600
TU924562 other downstream 513336 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 927631 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 971201 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 1083019 49115137 ~ 49115618 (+) True G813139
TU927553 other downstream 2764096 50796214 ~ 50800381 (+) False G815428

Expression Profile