RNA id: TU924562


Basic Information

Item Value
RNA id TU924562
length 1316
RNA type TUCP
GC content 0.57
exon number 8
gene id G812688
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48545454 ~ 48570593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCTACAGCGATGATCTCCACGCCGGTGTTCTTCAGCCGGTTGGCTGCAGCGATGGCGTCATCCTGCGACTTCCCATCCGTCAGGAGGATCAGGATACGAGGGGTGTCCGGCCTCGCCCCCGACTCGTGTCTCAGGTTCTCCTCCAGGACATGCAGCAGAGCCTGGCCTGTGAAGGTGTTGCCGCCCTTGTATCTGAAGTTCCTGACGGCCTCCAGCAGTTGCTCTTTGGTAGTGAAGTTGTTGAGCTGCCACTCAGTGCGAGGGTCTCCACTGTACTGAGAAAGGGCTATCTGCACCCTGTCTGGGCCGATATGGAAAGGCGTGACTAGACCCTCCAGGAAGTCCCTGACACGTCTGAAGTTGGTGCGTCCAATGCTCCAGGAGCCGTCCACCAACATGACCACGTCAGCGGCTGCTGTCGTGTCACACTCAAAGGCCTTCCGAGTGGACACCACTGTGACAGGCTGGGTGGGGATTGTCTTCCTGACTTTCTCCCTGTCAGAGTTCTCATCCTCTACTGGTTTCCCCTGAGTTGTCCCCTGCTCCTCCTTATTGTCCACCTTGGAGcgatccttctctttcttcctcttcctcttctctttggGAGCCTTCTCTGTCACCAACTCATTATTCTGGGTAGTTGTTTCTGGAGTAGTTGGAGGTTctgtagtggtggtggtggtggttgccGGCTCATGGTAGACCACAGTGGGTACAGCTACCAGGGCCTCTATGGGGTCATCCAGTTCACCTGACCCTGACCCCCCTGGTAGGGCCTTCCGCCGCTGTTCACGACTGCCACTACGGACCAACTCTTCTTCTCGCAAGCCCTCAATGGTGAAGCGTCTCTTGGCGATGAGTTTCTCCTGTGTGCCGTTGAGCACTAGGACCTGGAGGGCGTATTCCTGGCTGGAGTCCAGACCTGCCACTGTGGCCCGGCCACGCGTGGTCGTCAGCATCAGCTCCGGCTGGGGTACCTCTGAGATGGGCTTCACGCGGACCTTGTATCCCTGGACCGGCCCTTCAGCCTCCTTCCACTTCATCTGCAGCCGATCCTGAGACAGCACTGTCAGCTTCAGACGCCCTTGGCTATGGACTCCAGAGTTCATTAGCACCAGGAGAGTGACCAGGAAAGGCCCCATCAGCGCTGGGCAGCCTGGTCGTTGGCAGTGAAGAGGCATGATGACTAGAACATAGAAACCTGGGGTCGCAAGTTACGTCCAGGTTATTCCTTCAGCGCGAGATGAGACTTTTGCATTCCAAAGGTGAGGATGTCAACAGGCAGAACTTCCGCTTGCACTGCTTTGCTCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU924551 lncRNA upstream 3756 48540338 ~ 48541698 (+) True G812684
TU924553 lncRNA upstream 6577 48538027 ~ 48538877 (+) False G812684
TU924550 lncRNA upstream 10583 48534571 ~ 48534871 (+) True G812683
TU924464 lncRNA upstream 109795 48426284 ~ 48435659 (+) True G812613
TU924400 lncRNA upstream 215627 48329596 ~ 48329827 (+) True G812555
TU924612 lncRNA downstream 49176 48619769 ~ 48620058 (+) True LOC118966185
TU924860 lncRNA downstream 171209 48741802 ~ 48742338 (+) True G812951
TU924875 lncRNA downstream 225710 48796303 ~ 48796775 (+) True G812966
TU924963 lncRNA downstream 339583 48910176 ~ 48910471 (+) True G813047
TU924968 lncRNA downstream 344683 48915276 ~ 48915608 (+) True G813052
XM_021615993.2 mRNA upstream 141451 48400637 ~ 48404003 (+) True LOC110532258
XM_021615992.2 mRNA upstream 151355 48386767 ~ 48394099 (+) True LOC110532257
XM_021615978.2 mRNA upstream 286117 48224647 ~ 48259337 (+) False snphb
XM_036988194.1 mRNA upstream 286117 48236716 ~ 48259337 (+) True snphb
XM_021615974.2 mRNA upstream 386490 48104332 ~ 48158964 (+) True ntsr1
XM_036988202.1 mRNA downstream 10650 48581243 ~ 48582509 (+) True taf13
XM_036986950.1 mRNA downstream 45730 48616323 ~ 48617448 (+) True LOC110531191
XR_005053451.1 mRNA downstream 48390 48618983 ~ 48620336 (+) False LOC118966185
XR_005053452.1 mRNA downstream 48390 48618983 ~ 48620336 (+) False LOC118966185
XM_021616005.2 mRNA downstream 55726 48626319 ~ 48636018 (+) False si:rp71-17i16.5
TU923963 other upstream 563153 47982001 ~ 47982301 (+) True G812143
TU921250 other upstream 2409722 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 4092377 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 4349413 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 6196668 42346176 ~ 42348786 (+) True G805600
TU924989 other downstream 389156 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 432726 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 544544 49115137 ~ 49115618 (+) True G813139
TU927553 other downstream 2225621 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 2225727 50796320 ~ 50800381 (+) True G815428

Expression Profile