RNA id: TU925310


Basic Information

Item Value
RNA id TU925310
length 281
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G813373
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48944973 ~ 48945253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCgagaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactgtgacagacaaaatgagaaaaaaaatccagaaaatcacattgtaggatttttaatgaatttatttgcaaattatggtggaaaataagtacactgactttcaactccctccaaagattttctatggggttgagatctggagactggttaggccactccaggaccttgaaatgcttcttacgaagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU925309 lncRNA downstream 1540 48941755 ~ 48943433 (-) True G813372
TU925308 lncRNA downstream 6174 48938323 ~ 48938799 (-) True G813371
TU925297 lncRNA downstream 26924 48917635 ~ 48918049 (-) True G813360
TU925177 lncRNA downstream 206186 48737140 ~ 48738787 (-) True G813247
TU925147 lncRNA downstream 246292 48698455 ~ 48698681 (-) True G813217
TU925316 lncRNA upstream 3616 48948869 ~ 48950356 (-) False LOC110532274
TU925317 lncRNA upstream 3616 48948869 ~ 48950222 (-) True LOC110532274
TU925322 lncRNA upstream 14254 48959507 ~ 48959732 (-) True G813383
TU925325 lncRNA upstream 22082 48967335 ~ 48975292 (-) True G813386
TU925395 lncRNA upstream 149901 49095154 ~ 49096557 (-) True G813450
XM_021616003.2 mRNA downstream 356412 48585633 ~ 48588561 (-) True LOC110532266
XM_021616002.2 mRNA downstream 363809 48571666 ~ 48581164 (-) True slc35c2
XM_036988201.1 mRNA downstream 374356 48534552 ~ 48570617 (-) True LOC110532264
XM_021615999.2 mRNA downstream 415482 48522181 ~ 48529491 (-) True dpm1
XM_021616000.2 mRNA downstream 415484 48522181 ~ 48529489 (-) False dpm1
XM_036988216.1 mRNA upstream 3622 48948875 ~ 48959112 (-) False LOC110532274
XM_021616023.2 mRNA upstream 16910 48962163 ~ 48979134 (-) True LOC110532275
XM_021616026.2 mRNA upstream 58035 49003288 ~ 49006767 (-) True LOC110532280
XM_021616028.2 mRNA upstream 114818 49060071 ~ 49063440 (-) False LOC110532281
XM_021616027.2 mRNA upstream 114818 49060071 ~ 49063505 (-) True LOC110532281
TU925294 other downstream 29269 48915435 ~ 48915704 (-) True G813357
TU924730 other downstream 435879 48508645 ~ 48509094 (-) True G812840
TU924356 other downstream 658543 48278174 ~ 48286430 (-) True LOC110532252
TU923584 other downstream 1268324 47674390 ~ 47676649 (-) True LOC110531190
TU923583 other downstream 1280019 47663065 ~ 47664954 (-) False LOC110531190
TU926019 other upstream 518704 49463957 ~ 49466762 (-) True G814020
TU926169 other upstream 789892 49735145 ~ 49736111 (-) True G814157
TU927144 other upstream 1273103 50218356 ~ 50218697 (-) True G815044
TU927145 other upstream 1273614 50218867 ~ 50219848 (-) True G815045
TU930130 other upstream 3208029 52153282 ~ 52153642 (-) True G817848

Expression Profile