RNA id: TU924996


Basic Information

Item Value
RNA id TU924996
length 2578
RNA type TUCP
GC content 0.49
exon number 2
gene id G813074
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48962187 ~ 49006710 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACACTACAGCCGGATTTACATCTCAGAACCATTTTTTCTCTTATTCACAAAATGAGGTGACTTCTCTCTTGACCTTCTTATAACCGGTTGATAACCTTGACCTCTGTACAGTGACTTTTCATGATGATCTCGTCAAATATTTATTATTCACAGCACTTTGATGGAAATTACTACGTCTTAACCATCCCTCTTGATTATTAATAAAACTCAAAGTAATAATGTATACAGTGATACGGGATGGCTAAAGATGAATTAGCTCCATctggagttgggggggggggggggggggggcatgaagAAAATTCTATGGCACACTTGTCTGTGTTGGCTAGTGAGAGAACACACATTGTTTAACAGATATGTAAATAGGCTGTGACATCAAAAATAATTATCTCAGTGCCCCACACTCTGAGGCTCCAAGGGAATGTTAGTTAGTCAAACCTATCATAATAATCTAACATAATACTCAGTTTATCTTGATCTAATAATCCGTAGGATGAAAACATTGGGGTGACACTTCTACAAAGATATTAAATGGAGCTCTTCTCCTAATCTGCACTTAGTCAGTCTTAACTTCCTGTAAAATGAACCACCTTAAAACTGGATGGGGTGTGGTCTCTATTTGGAGAGAACATCAAAAGGAGAGACATTACAGACTTTAAAGGTACAGAGAAGGTGACACTGACAATGGTCCCAGTCCTCTGACTAATAACACTGAAAACAAAAGGCGTGTCCATGGAGAGATCCAGCATCTGATCCCTGTGTGGTGGGACtggggaggaaagggggtgagGTTGAGGTTGGAATGTCCACTGCTGAAAAGTGAGTTGTTTTGTTACCACATCTAATCAGGTTAGGTGATAGGATGGAAAGAAAAGGCAGGCAGGAGAAGCCAATTCAGCTGGACCCGCTGATTGACAGGATGGTGGAGCTGTCCTTGGCTTTGTCAAAGAAGATGGAGGATGTGCTCTTGAGTTTGGCCTCAGTGCCAGGGGAAGAGGAACTGCCGGGTTGGCACTCctcacagcagcagcagcagcagtccatGAAGGCCTGGCCCAGGGACTTACAGAGGCACAACAGCAGCACCGGCGTCACCGACGACTTGAAGAACAAGAAAAACTGGTTGATGAGGGCCAGTAGGGTGGCGGTGTCATCAGAGATGGGCATGGCGGTGTAGGCCAGAACGATGTTGCACACGTTCTCCGGCAGGGCGCAGATGCCATAGACCACGGCCAGGGCCATCACGGTGCAGTTGAGCTGGCGCTCCAcctgttgactgtgttgtatctTCTGCTTCTTGGAGGGGGAGCGCTCCTCCAGACGCTCAGGGATACCGTCATTGGACACGTGGCAGGTGGCCAGCTGGCACAGCAGGGTGAAGACTACAGGCAGGCAGAAGTAGCAGCCAAAGTACCACCACATGCGGCACTCGTGGTAGTTGATGACCAGGGCGTAGATGGACTCGGGAAGGTTGGAGGTAGGGTTCATGGTGCAGGAGTCCATCAAGGCCCCTGTGGCTGGAGACACGGCCTGGCTGAGCTGCCATAGGAGCAGCTCTGGGGCCGCCAGCACCATGGAACCAACCCAGATGACCAGCAGCTTGGCCAGGACGGACTGACAGCGCTCCACCCGACGGGTCTTGGGCTGGGAGCTAGTGGTAGCATTAAAGCGGTCGATACCCAGGGCACACAGGCTGAAGGAAGTCACCCCTAGGGAAGTCACCTCATATATGGTACCACTCTGCATGAGATGTCCCCCAGCAGCCTCTTATTGGTGAGCTCATTGAAGACCACCACAGGTAAACAGAAGCAGAGCACCAGGAAATCCCAGAAAGCCAAGCTGGCCAGGATGTAGTTCCAGGCACTCCTCATGTAGTAGTTGTGCCAGACGATGCACATCACAGCCAGGTTCCCTATAATCCCCACAGCGAACACCACCAGGGACAGGAACATGACAGCGTAGGCAGTGTAGGAGCTGTCAGTCACTGGGTACAGAGGGTTGTGGATGTGGGTGATGCCCCGCTCTGTGGTGCTGGTATTGTCCTGGTCCCCATCTGTGTTGGCTCCAGTGTCTAGGGTTGAGTTAGAGAACTGGGTGGCTCTGGGTGTGGTGAAGAATTCATTCTCATAAGACTGTGAGAAGGTAGACTGAGGTTCACCTGCGTCTGTGTCCATGGTCTCTGCGCCCCGCGGCGCTCTCTTGTGCTGTTTGTCAAATTGCAGTTGTTTTACATCCTCATCACCATAACCATGGCTTTGAATGACTTGAATGTCGAGATTTGACATATCCTTTTCAACAGATGCACTGTTTGTCTGTGGAACATTTTTTGCATCGGAAGCCCACACTGTCAATAGTATCACCAATGAAATAAAGGGAATCATCGTGAGATGAGTAGCCTGAAAAGTAGATTTTCTTTAAATTCCAAAACTTGACAGCTTTGATCACTGCAGGAGACGTGGTAAAAATGAGGCCCCTCAGCAGAAGTTAATTtaggagaagagaagaatgtgCCAATCCGTGGTGAGATGCTGAAGCTTGGGGAACTCTCTCTCTGCGTCCTGTGGCTGCAGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU924998 lncRNA upstream 27934 48967764 ~ 48975385 (+) True G813076
TU924878 lncRNA upstream 59890 48942199 ~ 48943429 (+) True G812969
TU924877 lncRNA upstream 63732 48939159 ~ 48939587 (+) True G812968
TU924976 lncRNA upstream 72892 48930216 ~ 48930427 (+) True G813060
TU924968 lncRNA upstream 87711 48915276 ~ 48915608 (+) True G813052
TU925022 lncRNA downstream 4624 49011334 ~ 49011612 (+) True G813099
TU925023 lncRNA downstream 4936 49011646 ~ 49011948 (+) True G813100
TU925049 lncRNA downstream 75614 49082324 ~ 49082584 (+) True G813125
TU925056 lncRNA downstream 78207 49084917 ~ 49085116 (+) True G813128
TU925063 lncRNA downstream 96873 49103583 ~ 49103820 (+) True G813135
XM_021616025.2 mRNA upstream 5034 48994635 ~ 48998285 (+) True LOC110532278
XM_021616024.2 mRNA upstream 8784 48988442 ~ 48994535 (+) True LOC110532277
XM_036988215.1 mRNA upstream 67987 48831069 ~ 48935332 (+) False klhdc8b
XR_005053268.1 mRNA upstream 69563 48909280 ~ 48933756 (+) True klhdc8b
XM_021616021.2 mRNA upstream 213574 48782956 ~ 48789745 (+) True si:dkey-32e6.3
XM_036988217.1 mRNA downstream 6453 49013163 ~ 49060073 (+) True LOC110532282
XM_036988220.1 mRNA downstream 56978 49063688 ~ 49081175 (+) False LOC110532283
XM_036988219.1 mRNA downstream 57250 49063960 ~ 49081175 (+) False LOC110532283
XM_036988218.1 mRNA downstream 57251 49063961 ~ 49081175 (+) False LOC110532283
XM_036988222.1 mRNA downstream 57335 49064045 ~ 49081175 (+) False LOC110532283
TU924989 other upstream 43328 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 432726 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 1021018 47982001 ~ 47982301 (+) True G812143
TU921250 other upstream 2867587 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 4550242 44442662 ~ 44453077 (+) True G807841
TU925067 other downstream 108427 49115137 ~ 49115618 (+) True G813139
TU927553 other downstream 1789504 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 1789610 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 2071737 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 2338662 51345372 ~ 51346494 (+) True G815767

Expression Profile