RNA id: TU926019


Basic Information

Item Value
RNA id TU926019
length 1226
RNA type TUCP
GC content 0.50
exon number 3
gene id G814020
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49463957 ~ 49466762 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctgtctgtctgtctgtgtcagtcggtcgtctctgtcggtctgtctgtctctatcgatctgtctgtctctattggtctgtctgtctgtctctactggtctgtctgtctgtatctatcggtctgtctgtctgtctgtctgtgtcagtcggtcatctctgtcggtctctctgtttccatcgatctgtctgtctctattggtctgtctgtctgtctgtctgtcagtcagtcattcagtcagtcagtcagtcagtctgtctgtctgtctgtctctgtcggtcagtctgtctctgtcggtcggtctgtctctgttggtctgtctgtctctgtcggtctgtctgtctgtctctgtcggtctgtctgtttgtctctgtctgtcagtctgtctctatcggtcagtcagtcagtcagtcagtcagtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtcagtcggtcgtctctgtcggtctctctgtctccatcgatctgtctttctctattggtctgtctgtctgtctgtctctgtcggtctgtctgtctgtctctgtcggtcagtctgtctctatcggtcagtcagtcagtcagtcagtcagtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtcagtcggtcgtctctgtcggtctgtctgtctctattggtctgtctgtctgtctctactggtctgtctgtctgtatctatcggtctgtctgtctgtctgtctgtgtcagtcggtcatctctgtcggtctctctgtctccatcgatctgtctgtctctattggtctgtctgtctgtctctatcggtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtatgtgtcagtCGGtcgtctctgtcggtctctctgtctctatcaatctgtctgtctctattggtctgtctgtctgtcagtcagtcagtcagtcagtcagtcagtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtcagtcggtcgtctctgtcggtctgtctgtctctatcaatctgtctgtctctattggtctgtctgtctgtctctattggtctgtctgtctgtctgtctgtctgtctgtctgtctgtatgtgtcagtCGGtcgtctctgtcggtctctctgtctctatcgatctgtctgtctctattggtctgtctgtctgtctctatcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU926006 lncRNA downstream 18891 49443250 ~ 49445066 (-) True G814009
TU925932 lncRNA downstream 88947 49334113 ~ 49375010 (-) True G813944
TU925482 lncRNA downstream 280829 49182920 ~ 49183128 (-) True G813527
TU925478 lncRNA downstream 282557 49181176 ~ 49181400 (-) True G813523
TU925476 lncRNA downstream 283481 49180255 ~ 49180476 (-) True G813521
TU925980 lncRNA upstream 15982 49482744 ~ 49486201 (-) True G813991
TU925979 lncRNA upstream 24442 49491204 ~ 49493791 (-) True G813990
TU926033 lncRNA upstream 36419 49503181 ~ 49503418 (-) True G814034
TU926034 lncRNA upstream 37036 49503798 ~ 49504096 (-) True G814035
TU926039 lncRNA upstream 45548 49512310 ~ 49512613 (-) True G814040
XM_021616027.2 mRNA downstream 400452 49060071 ~ 49063505 (-) True LOC110532281
XM_021616028.2 mRNA downstream 400517 49060071 ~ 49063440 (-) False LOC110532281
XM_021616026.2 mRNA downstream 457190 49003288 ~ 49006767 (-) True LOC110532280
XM_021616023.2 mRNA downstream 484823 48962163 ~ 48979134 (-) True LOC110532275
XM_036988216.1 mRNA downstream 504845 48948875 ~ 48959112 (-) False LOC110532274
XM_036988233.1 mRNA upstream 288258 49755020 ~ 49770515 (-) False LOC110532296
XM_021616060.2 mRNA upstream 288258 49755020 ~ 49771887 (-) False LOC110532296
XM_036988232.1 mRNA upstream 288258 49755020 ~ 49771887 (-) False LOC110532296
XR_005053275.1 mRNA upstream 292252 49759014 ~ 49771887 (-) True LOC110532296
LOC110531196 mRNA upstream 339370 49806132 ~ 49818757 (-) True LOC110531196
TU925294 other downstream 548253 48915435 ~ 48915704 (-) True G813357
TU924730 other downstream 954863 48508645 ~ 48509094 (-) True G812840
TU924356 other downstream 1177527 48278174 ~ 48286430 (-) True LOC110532252
TU923584 other downstream 1787308 47674390 ~ 47676649 (-) True LOC110531190
TU923583 other downstream 1799003 47663065 ~ 47664954 (-) False LOC110531190
TU926169 other upstream 268383 49735145 ~ 49736111 (-) True G814157
TU927144 other upstream 751594 50218356 ~ 50218697 (-) True G815044
TU927145 other upstream 752105 50218867 ~ 50219848 (-) True G815045
TU930130 other upstream 2686520 52153282 ~ 52153642 (-) True G817848
TU930410 other upstream 3196691 52663453 ~ 52668720 (-) True LOC110532367

Expression Profile