RNA id: TU925855


Basic Information

Item Value
RNA id TU925855
length 232
lncRNA type intronic
GC content 0.38
exon number 1
gene id G813870
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49811934 ~ 49812165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctatattgtatttactttgccaccatggccttttttttgcctttacctcccttctcacctcatttgctcacatcgtatatagacttgtttatactgtattattgactgtgtgtttgttttactccatgtgtaactctgtgtcgttgtatctgtcgaactgctttgctttatcttggccaggtcgcaattgtaaatgagaacttgttctcaacttgcctacctggttaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU925813 lncRNA upstream 26879 49750066 ~ 49785055 (+) True LOC110531195
TU925803 lncRNA upstream 71334 49729408 ~ 49740600 (+) True G813822
TU925778 lncRNA upstream 121930 49657658 ~ 49690004 (+) True G813798
TU925769 lncRNA upstream 153343 49640220 ~ 49658591 (+) True G813789
TU925743 lncRNA upstream 209536 49601968 ~ 49602398 (+) True G813769
TU926240 lncRNA downstream 26873 49839038 ~ 49839290 (+) True G814225
TU926296 lncRNA downstream 66915 49879080 ~ 49879349 (+) True G814281
TU926333 lncRNA downstream 129304 49941469 ~ 49941746 (+) True G814313
TU926362 lncRNA downstream 172261 49984426 ~ 49984958 (+) True G814336
TU926478 lncRNA downstream 326031 50138196 ~ 50204968 (+) True LOC110532304
LOC110533019 mRNA upstream 8472 49800763 ~ 49803462 (+) True LOC110533019
XM_021616063.2 mRNA upstream 14903 49788722 ~ 49797031 (+) False gss
XM_036988234.1 mRNA upstream 14903 49788722 ~ 49797031 (+) False gss
XM_036988235.1 mRNA upstream 14903 49788722 ~ 49797031 (+) True gss
XM_036986951.1 mRNA upstream 61768 49745378 ~ 49750166 (+) False LOC110531195
XR_005053276.1 mRNA downstream 69991 49882156 ~ 49917857 (+) False LOC118966067
XR_005053277.1 mRNA downstream 69991 49882156 ~ 49917857 (+) True LOC118966067
XM_021616065.2 mRNA downstream 144676 49956841 ~ 49968731 (+) False si:dkey-8e10.3
XM_036988236.1 mRNA downstream 144676 49956841 ~ 49968731 (+) True si:dkey-8e10.3
XM_021616072.2 mRNA downstream 373300 50185465 ~ 50205006 (+) False LOC110532304
TU925067 other upstream 696316 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 805224 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 851943 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 1241341 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 1829633 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 984049 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 984155 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 1266282 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 1533207 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 2511106 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile