RNA id: TU926296


Basic Information

Item Value
RNA id TU926296
length 270
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G814281
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49879080 ~ 49879349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggatctcctcccagacctggactaaagcatccgccaactcctggacagtctgttggtggatggagcgagacatgatgtcccagatgtgctcaattggattcaggtctggggaacgggcgggccagtccatagcatcaatgccttcctcttgcaggaactgctgacacactccagccacatgaggtatagcattgtcttgcattaggaggaacccagggccaaccgcaccagcatatggtctcacaaggggtctgaggatctcatctcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU926240 lncRNA upstream 39790 49839038 ~ 49839290 (+) True G814225
TU925855 lncRNA upstream 66915 49811934 ~ 49812165 (+) True G813870
TU925813 lncRNA upstream 94025 49750066 ~ 49785055 (+) True LOC110531195
TU925803 lncRNA upstream 138480 49729408 ~ 49740600 (+) True G813822
TU925778 lncRNA upstream 189076 49657658 ~ 49690004 (+) True G813798
TU926333 lncRNA downstream 62120 49941469 ~ 49941746 (+) True G814313
TU926362 lncRNA downstream 105077 49984426 ~ 49984958 (+) True G814336
TU926478 lncRNA downstream 258847 50138196 ~ 50204968 (+) True LOC110532304
TU926524 lncRNA downstream 314466 50193815 ~ 50198790 (+) True G814483
TU926537 lncRNA downstream 337995 50217344 ~ 50217613 (+) True G814493
LOC110533019 mRNA upstream 75618 49800763 ~ 49803462 (+) True LOC110533019
XM_021616063.2 mRNA upstream 82049 49788722 ~ 49797031 (+) False gss
XM_036988234.1 mRNA upstream 82049 49788722 ~ 49797031 (+) False gss
XM_036988235.1 mRNA upstream 82049 49788722 ~ 49797031 (+) True gss
XM_036986951.1 mRNA upstream 128914 49745378 ~ 49750166 (+) False LOC110531195
XR_005053276.1 mRNA downstream 2807 49882156 ~ 49917857 (+) False LOC118966067
XR_005053277.1 mRNA downstream 2807 49882156 ~ 49917857 (+) True LOC118966067
XM_021616065.2 mRNA downstream 77492 49956841 ~ 49968731 (+) False si:dkey-8e10.3
XM_036988236.1 mRNA downstream 77492 49956841 ~ 49968731 (+) True si:dkey-8e10.3
XM_021616072.2 mRNA downstream 306116 50185465 ~ 50205006 (+) False LOC110532304
TU925067 other upstream 763462 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 872370 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 919089 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 1308487 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 1896779 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 916865 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 916971 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 1199098 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 1466023 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 2443922 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile