RNA id: TU926538


Basic Information

Item Value
RNA id TU926538
length 213
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G814494
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50219592 ~ 50219804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaggtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtattttttgtgacgaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaacttggctgtgcaaaattattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU926537 lncRNA upstream 1979 50217344 ~ 50217613 (+) True G814493
TU926478 lncRNA upstream 14624 50138196 ~ 50204968 (+) True LOC110532304
TU926524 lncRNA upstream 20802 50193815 ~ 50198790 (+) True G814483
TU926362 lncRNA upstream 234634 49984426 ~ 49984958 (+) True G814336
TU926333 lncRNA upstream 277846 49941469 ~ 49941746 (+) True G814313
TU926480 lncRNA downstream 135465 50355269 ~ 50359369 (+) True LOC110532305
TU926636 lncRNA downstream 145994 50365798 ~ 50372376 (+) True G814590
TU926641 lncRNA downstream 153758 50373562 ~ 50373769 (+) True G814594
TU926649 lncRNA downstream 160220 50380024 ~ 50380236 (+) True G814602
TU926670 lncRNA downstream 202839 50422643 ~ 50422974 (+) True G814621
XM_021616072.2 mRNA upstream 14586 50185465 ~ 50205006 (+) False LOC110532304
XM_021616065.2 mRNA upstream 250861 49956841 ~ 49968731 (+) False si:dkey-8e10.3
XM_036988236.1 mRNA upstream 250861 49956841 ~ 49968731 (+) True si:dkey-8e10.3
XR_005053276.1 mRNA upstream 301735 49882156 ~ 49917857 (+) False LOC118966067
XM_036988238.1 mRNA downstream 5040 50224844 ~ 50359363 (+) False LOC110532305
XM_036988239.1 mRNA downstream 5040 50224844 ~ 50359363 (+) False LOC110532305
XM_021616079.2 mRNA downstream 182760 50402564 ~ 50408370 (+) True fam217b
XR_005053278.1 mRNA downstream 203642 50423446 ~ 50428094 (+) True LOC118966068
XR_005053279.1 mRNA downstream 225748 50445552 ~ 50556296 (+) False si:dkey-178k16.1
TU925067 other upstream 1103974 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 1212882 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 1259601 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 1648999 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 2237291 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 576410 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 576516 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 858643 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 1125568 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 2103467 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile