RNA id: TU926670


Basic Information

Item Value
RNA id TU926670
length 332
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G814621
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50422643 ~ 50422974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTAAAAGAGCTTTATACATGAAAACATAGCACTGTATCACCCTACGTGACAACAAAGAGGGCCAACtaactttctggtagagaatgcagggATGAGTACTAAAACTGTCGCCAGTAATAAAGTGCAGTGTGCTATGTTAAACTGCATCTAACggctttaatgaagtggcagAGTGGACGGAGTTTCTAAAAATTGCGTTGTTTAGAAGGACCATATGGACTGGTCTAGGCCAATTGAGGAAAGCTTCTGAATTAGCAGTGAGTAATCAACAGTATTGAAGGCCTTTGACAGGTTAATGAAGAGGACAGCACAATGTTGCCTTTTATCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU926649 lncRNA upstream 42407 50380024 ~ 50380236 (+) True G814602
TU926641 lncRNA upstream 48874 50373562 ~ 50373769 (+) True G814594
TU926636 lncRNA upstream 50267 50365798 ~ 50372376 (+) True G814590
TU926480 lncRNA upstream 63274 50355269 ~ 50359369 (+) True LOC110532305
TU926538 lncRNA upstream 202839 50219592 ~ 50219804 (+) True G814494
TU926673 lncRNA downstream 8916 50431890 ~ 50432090 (+) True G814624
TU926675 lncRNA downstream 10588 50433562 ~ 50433778 (+) True G814626
TU926677 lncRNA downstream 11749 50434723 ~ 50434938 (+) True G814628
TU926680 lncRNA downstream 14063 50437037 ~ 50437266 (+) True G814631
TU926718 lncRNA downstream 50441 50473415 ~ 50565395 (+) True G814639
XM_021616079.2 mRNA upstream 14273 50402564 ~ 50408370 (+) True fam217b
XM_036988238.1 mRNA upstream 63280 50224844 ~ 50359363 (+) False LOC110532305
XM_036988239.1 mRNA upstream 63280 50224844 ~ 50359363 (+) False LOC110532305
XM_021616072.2 mRNA upstream 217637 50185465 ~ 50205006 (+) False LOC110532304
XM_021616065.2 mRNA upstream 453912 49956841 ~ 49968731 (+) False si:dkey-8e10.3
XR_005053278.1 mRNA downstream 472 50423446 ~ 50428094 (+) True LOC118966068
XR_005053279.1 mRNA downstream 22578 50445552 ~ 50556296 (+) False si:dkey-178k16.1
XM_036988244.1 mRNA downstream 22578 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988245.1 mRNA downstream 22578 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988246.1 mRNA downstream 22578 50445552 ~ 50557497 (+) True si:dkey-178k16.1
TU925067 other upstream 1307025 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 1415933 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 1462652 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 1852050 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 2440342 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 373240 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 373346 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 655473 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 922398 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 1900297 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile