RNA id: TU928633


Basic Information

Item Value
RNA id TU928633
length 1697
lncRNA type antisense_over
GC content 0.49
exon number 4
gene id G816478
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 51727771 ~ 51737134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCAGCTGGCACATAACGTTTTTGTAATGTTCTGCAACGTTTTCACAACTTTGTAAAACATTTCCTTGCTAGCTGGGCATATGGGTGGGCCTATATGCTCCAGTATCCATTTAAATATGGTAGTTACATCATCGTCTTAGGGTCTTAAAGTCCACCCGCCTCCCCCTGCATCCAAACACACACTACCCTTAGCTAACATCCACACGTGACAAGACCGATTTAATCTCTTTCACTTTGACATATGTTCTTGTAGGGGGAGCTTTGTGCCCTGAAGAGAGTGGTGTGTTGTGTCACTGAGTTGCTCCTTAAGCATGGTAAGAGGAGACGCTTCCACCGTGGCATCCAATGTGTTGTTACCTGGAGGAGGTTAGCCGGGAGCATGTCGTGTCTGTAGCCGTCGTAGAAGGACAAGGCGGTGGTGAAACAAGGCATAGGGATCCCCTGCTGCACTCCAATGCTGACCGCCCGGCGCCACGAGTCCTACAGCCATGACAAAGACAGGCACACGCATGAGCAAAAGCACACAGAATAATCTCTAACCCTCTGGGATTTGGGAACATCATGgtgaatacatttatttcaagTTTATTAGACAAGATCATTGCAAAGCAATATGACATGAACACTTATAATCACATAATTAGATAGCTACAAGGGGTTTATTTATTTAAACGCAGAGACCAAATACAGTATAACTTTGTAAATGTTGCCCTGTCTTGGGCCATACCATGTACAACACTGCGATTAAAATGCAGTATGAATAAGAAGCCCATGACATGTCATCTatattacaaaaacacatttccaccAATAACTAACAGCCCCAATATATTCTCCTTTTGTGGGCTGGGAAATGGTATGATGTATCAATATAGCGGTGGGGTGGTAACAGCCGTGAGTGTGTGTTGCTAACGTGGCCACAAAGGGGTTGGGCTTTCTTTCATCACTTCCTACTCCCCTAGGTGCAGATTGAGGATCAgcctcccctcccccaatcctaaacttaacccttatgGGGGGAAAATGCTAAAAATGACCCAAGTTCAGCATTTTAGAGCAGATTAACCCTACTCTCCTTTACTGTACCTGGCAGTCCTGTACGGCATTACTGAAGAAGGTATCCAACAGCAGATTCTGCAGCTCAGCATCCCTGTCAAAGGCCTCTTTGATCTTCCCCAGGAAAACACTTCGGATGATGCAGCCTCCCCTCCACATCAGGGCAATGGCGCCATAGTTTAGGGACCAGCCAAACTCTTTGGCCGCCTGTCTGAGCAGCATGAAGCCCTGGGCATACGAGATGATCTTGGAGGCATAGAGGGCCTTTCTGATGTCCTCAAGGAACGAAGCCTTGTCCCCGTTGAACTTGGCTCCCTGGGGCCCGGCCAGGCTCCTGCTGGCCTCCACTCTCTCGTCCTTCAGGGCCGACAGACATCTGGCAAAGACAGCCTCGCCGATCAGGGTGACTGGTGTGCCGTACTCGAGAGCCGAAATAGCCGTCCACTTCCCTGTGCCTTTCTGCCCGGCGGCGTCCCGGATCTTAGGCAGCAGGTGAGTGCCGTCTGTGTCTCTGAACTTGAGGATGCCAGCTGTGATCTCGATAAGGAAGGAGTCCAACTCCGTTTTGTTCCAGTCTTCAAAAGCCTATGGGAGACCCAAGAGCAGAAGTGAACCTGACAAACAGAATAATCAACTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU928663 lncRNA upstream 26801 51700699 ~ 51700970 (+) True G816505
TU928662 lncRNA upstream 29382 51698163 ~ 51698389 (+) True G816504
TU928580 lncRNA upstream 127445 51599976 ~ 51600326 (+) True G816427
TU928579 lncRNA upstream 127978 51599459 ~ 51599793 (+) True G816426
TU927909 lncRNA upstream 377568 51348231 ~ 51350203 (+) True G815768
TU928677 lncRNA downstream 8603 51745737 ~ 51746013 (+) True G816519
TU928679 lncRNA downstream 10346 51747480 ~ 51747703 (+) True G816521
TU928680 lncRNA downstream 10923 51748057 ~ 51748477 (+) True G816522
TU928767 lncRNA downstream 118471 51855605 ~ 51857288 (+) True G816600
TU928769 lncRNA downstream 130325 51867459 ~ 51867996 (+) True G816602
XR_005053280.1 mRNA upstream 17419 51705866 ~ 51710352 (+) False tardbpl
XR_002474820.2 mRNA upstream 17422 51705868 ~ 51710349 (+) True tardbpl
XM_036988264.1 mRNA upstream 18312 51705866 ~ 51709459 (+) False tardbpl
XM_036988263.1 mRNA upstream 18312 51705867 ~ 51709459 (+) False tardbpl
XM_021616112.2 mRNA upstream 18312 51705868 ~ 51709459 (+) False tardbpl
XM_021616133.2 mRNA downstream 184012 51921146 ~ 51924442 (+) False lzic
XM_021616132.2 mRNA downstream 184090 51921224 ~ 51924442 (+) False lzic
XM_021616131.2 mRNA downstream 184148 51921282 ~ 51924442 (+) True lzic
XM_021616142.1 mRNA downstream 436876 52174010 ~ 52176441 (+) True LOC110532337
XM_021616144.2 mRNA downstream 445094 52182228 ~ 52189437 (+) True LOC110532339
TU927907 other upstream 381277 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 648829 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 927390 50796214 ~ 50800381 (+) False G815428
TU927551 other upstream 927390 50796320 ~ 50800381 (+) True G815428
TU925067 other upstream 2612153 49115137 ~ 49115618 (+) True G813139
TU929026 other downstream 586137 52323271 ~ 52325640 (+) True LOC110532349
TU929242 other downstream 989287 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2989737 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 3496124 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 3793903 55531037 ~ 55615401 (+) False dlgap4a

Expression Profile