RNA id: TU928934



Basic Information


Item Value
RNA id TU928934
length 375
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G816758
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52149238 ~ 52149612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acttaatataatgtttgcataccctacattactcatctcatatgtatacactgtactctatcatctactgcatctttatgtaatacatgtatcactagccactttaaactatgccactttgtttacataccctacattactcatctcatatgtatatactgtactctataccatctactccatcttgcctatgccgttctgtaccatcactcattcatatatctgtatgtacatattctttatccctttacacttgtgtgtataaggtagtagttttggaattgttaggttagattactcgttggttgttactgcactgtcggaactagaagcacaagcatttcactacactcgcattaacatctgctaaccatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU928891 lncRNA upstream 562 52148464 ~ 52148676 (+) True G816716
TU928929 lncRNA upstream 6393 52142557 ~ 52142845 (+) True G816753
TU928928 lncRNA upstream 7401 52141622 ~ 52141837 (+) True G816752
TU928927 lncRNA upstream 8741 52140260 ~ 52140497 (+) True G816751
TU928925 lncRNA upstream 10311 52138624 ~ 52138927 (+) True G816749
TU928935 lncRNA downstream 117 52149729 ~ 52149929 (+) True G816759
TU928941 lncRNA downstream 7516 52157128 ~ 52157343 (+) True G816765
TU928904 lncRNA downstream 9227 52158839 ~ 52159827 (+) True G816729
TU928954 lncRNA downstream 22867 52172479 ~ 52172720 (+) True G816778
TU928957 lncRNA downstream 26926 52176538 ~ 52176741 (+) True G816781
XM_021616133.2 mRNA upstream 224796 51921146 ~ 51924442 (+) False lzic
XM_021616132.2 mRNA upstream 224796 51921224 ~ 51924442 (+) False lzic
XM_021616131.2 mRNA upstream 224796 51921282 ~ 51924442 (+) True lzic
XR_002474820.2 mRNA upstream 438889 51705868 ~ 51710349 (+) True tardbpl
XM_021616112.2 mRNA upstream 439779 51705868 ~ 51709459 (+) False tardbpl
XM_021616142.1 mRNA downstream 24398 52174010 ~ 52176441 (+) True LOC110532337
XM_021616144.2 mRNA downstream 32616 52182228 ~ 52189437 (+) True LOC110532339
XM_036988289.1 mRNA downstream 57614 52207226 ~ 52216054 (+) False si:dkey-6n6.1
XM_036988288.1 mRNA downstream 57616 52207228 ~ 52216054 (+) True si:dkey-6n6.1
LOC110531199 mRNA downstream 71225 52220837 ~ 52224935 (+) True LOC110531199
TU927907 other upstream 802744 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1070296 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1348857 50796214 ~ 50800381 (+) False G815428
TU927551 other upstream 1348857 50796320 ~ 50800381 (+) True G815428
TU925067 other upstream 3033620 49115137 ~ 49115618 (+) True G813139
TU929026 other downstream 173659 52323271 ~ 52325640 (+) True LOC110532349
TU929242 other downstream 576809 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2577259 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 3083646 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 3381425 55531037 ~ 55615401 (+) False dlgap4a

Expression Profile