RNA id: TU929073


Basic Information

Item Value
RNA id TU929073
length 1722
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G816872
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52364640 ~ 52366398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaaacacattttttatttatttttgtgcacaggtacagttgaagtcgaacgtttccatacatttaggttggagtcattaactcatttttcaaccactccacaaatttcttgttaacaaactataggtttggcaagtcggttaggacatctactttgtgcatgacaagtaattttccaacaattgtttacagaaattatttcactatcacaattccagtgggtcagaagtttacatgcagtaaattgactgtgcctttaaacagcttggaaaattacagaaaatgtcaaggctttagaagcttctgttaggctaattgacatcattcgagtcaattggagttgtacctgtggatgtatttcaaggcctaccttcaaacgcagtgcctctttgcttgacatcatggtaaaatcaaaagaaatcagcctggttcatccttgggagcaatttccaaggtaccacgttcacctgtacaaacaatagtacgcaagtataaacaccatgggaccacgcagccgtcataccgctcaggaaggagacgcgttctgtctccatgagatgaacgtactttggtgcgaaaagtgcaaatcaatcccagaacagtagcaaaggaccttgtgaagatgctggaggaaaccggtacaaaagtatttatccacagtaaaacgagtcctatatcgacataacctgaagccactgctccaaaacatccataaaaaagcaagactacggtttgtaactgcacatggggacaaagataatacttttgggagaaatgtcctctggtctgatgaaacaaaaatagaactgtttggccataatgacaaagccctgacctcaatcccatagaaaatgtgtgggcagaactgaaaaagtgtgtgaaagcaaggaggcctactcagtaacaccaactctgtcaggagaaatgggccaaaattcacccaagttattgtggaaggctacccaaaacgtttgacccaagtttaactatttaaaggcaatgctaccaaacactaattaagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaatcattattctctaatattattctgacatttcacatatttaaaataaagtggtgatcctaactgacctaaaacagggatttttttacagagattaaatgtcagaaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtactcatGTCGATATGTTAAGAAATCAAGTGACTTGTAGACTGCATCATTAGTTATTAACTACCTCATTTTAAGCATTTAAGCATTTAAGCATtgataaaagtaaaaaaaaacacaaaaaaacacaaaatcagACTTCACCTCTGAAGTGATCGAGGTACACCAAATATGCTCTACACAGGACCAATAGTTTTTCAACGGTCACCATCTGAGACTAATGTAAAGACTGTCATAAGAAGCTGTGCAGCCAAGGCAACTAGGTTCTTAATGTTTGGAGGGACAGTCCTGTTCTTTTCACATTGGTTTTCGTTGTTCTCAGCTGCAAGCTCAACATTTCCTTTCTTGTAAAATGTCTCTTCTGCAAGGTTCTGTTTCTAGAAGTCCTGTCGAATGTTTTCCTTGTTCTCGTCACCATGCTGCTGTTTGAGCTGTCCAACTTCATTCTCCAACTGGACGATGGCACGTTCAATCTCATAGTTCTTACTTACGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU928973 lncRNA upstream 111762 52204844 ~ 52252878 (+) True LOC118966072
TU929001 lncRNA upstream 114493 52249545 ~ 52250147 (+) True LOC110531200
TU928964 lncRNA upstream 165286 52198963 ~ 52199354 (+) True G816788
TU928957 lncRNA upstream 187899 52176538 ~ 52176741 (+) True G816781
TU928954 lncRNA upstream 191920 52172479 ~ 52172720 (+) True G816778
TU929074 lncRNA downstream 555 52366953 ~ 52371758 (+) True G816873
TU929076 lncRNA downstream 5786 52372184 ~ 52375043 (+) True G816875
TU929066 lncRNA downstream 58959 52425357 ~ 52443755 (+) True G816865
TU929117 lncRNA downstream 63588 52429986 ~ 52431199 (+) True G816914
TU929132 lncRNA downstream 124598 52490996 ~ 52491313 (+) True G816929
XR_002474822.2 mRNA upstream 38716 52323001 ~ 52325924 (+) False LOC110532349
XM_021616150.2 mRNA upstream 69784 52260180 ~ 52294856 (+) False LOC110532344
XM_021616151.2 mRNA upstream 69784 52260180 ~ 52294856 (+) False LOC110532344
XM_021616152.2 mRNA upstream 69784 52260180 ~ 52294856 (+) False LOC110532344
XM_021616154.2 mRNA upstream 69784 52260180 ~ 52294856 (+) False LOC110532344
XM_021616200.2 mRNA downstream 119125 52485523 ~ 52488233 (+) False sike1
XM_036988302.1 mRNA downstream 119151 52485549 ~ 52488233 (+) True sike1
XM_036988303.1 mRNA downstream 136599 52502997 ~ 52504594 (+) True LOC118936401
XM_036988304.1 mRNA downstream 147113 52513511 ~ 52514463 (+) True htr6
XM_036988306.1 mRNA downstream 183729 52550127 ~ 52559520 (+) False vwa1
TU929026 other upstream 39000 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1018146 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1285698 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1564259 50796214 ~ 50800381 (+) False G815428
TU927551 other upstream 1564259 50796320 ~ 50800381 (+) True G815428
TU929242 other downstream 360023 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2360473 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2866860 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 3164639 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 3331242 55697640 ~ 55697978 (+) True G820944

Expression Profile