RNA id: TU929076


Basic Information

Item Value
RNA id TU929076
length 2807
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G816875
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52372184 ~ 52375043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttcagaaagtattcataccccttgacttatgacacattttgttgttacatcctgaatggattcaataaaacaactcagccatctacacacaatacctcagaatgacaaaatgaaaacgtttttttgaaatttttgctaattaaagtaagtattcacacctgagtcaatactttgtagaagcacctttggcagtgattacagctgtgagtctttctgggtaagtgtctaagagctttccacagctggattgtgcaacatttgaccattattgttttcaaaattcttcaagatcTGTTAAATTGGTTCTTGATCAtagctagacaaccattttcaggtctgccatagattttcaagtagatttaagtcaaaactataactgaactactcaggaacattcacgatcttagtaagcaactccagtgtggaTTTGGCCTTCAGGTTATTGTGCTACTTCaatgtgaatttgtctcccagtgtctggtggaaagcagacaaccaggttttcctctaggatttagcctgtgcttagctctattccatttctttattATCCTGAAAAACGCCCTAGTCCTTAACATGCATAGTCCTTACATGCATActcaacatgatgcagccaccactatgcttgaaaatatggagagtggtactcagtaatgtattgtatttgccacaaacataacactttgtattcaggacaaaaagtgaattgctttgccacattttttgcagtaatactttagtgccttgttgcaaataggatgcatgttttgaaatgttttattctGAACAGGCATCTTTTTTTTCACTCTTTAAATTGGATAGTATTGTGAATTAATGAGGATGTTGATtcatcctatcacagccattaaactctgttttaaagtccccattggcctcatgttgaaatcACTGAGCGGTTTCTTCCCTCTCTGGCAACTAAGTTAGATACAGGCGTTCTTCCTTTGTatagactgggtgtattgatacaccatacaaagtgaaattaataacttcaccatgctcaaagggatattcattgtctgcttttttttaacctcatctaccaataggtgtcctttgcgaggcattggaaaaccgcCCTGgtcttgtggttgaatctgtttgaaattcactgcttgactgagggacctcaAAGATAAtttattgtatgtgtggggtacagagatgaggtagtcatacaAAAATCATATTAAgcacttattgcacacagagtaagtccatgcaacttatcgTGTGACTTGACAAGCAaacttttactcctgaacatattacctcgactaacctgtatccccgcacattgactcggtacccctgtatatagcctcgttcttgtTATTTTGTTACTTAaaaatctgcattgttggttaagggcttgtaagtaagcatttcacggtaaggtttacaccggttgtattcggcacatgtgacaaatacacttttatttgaacttaataacaaaggggttgaatacttgacattttcagcttttcatcaagttgtaaaaaattatacaaatataattccacattatggggtattgtatgtagaccAGTGACCAAAtaaaactaataataataataattcgcAGTTTAAttcatttaaaattcaggctgtaacacaaaacgtgaaaaatgtcaaggggtgtgaatactttctttaGGCACTAAGTATGCAACTCCAGTCAATAGGAAGGTGTGACTAGTTAGTTTCTGGTCTCTAGTTGTGACTTTTTAAAACCCACATGAGAACATCAAAAACGTTTTTAGCAAACTTTGTGCATTGGAATGTTGGATACATGAGATTAAGACTCAGTTCTGATCCTTTAAAATCACATCCTTAGTCAAGGTGGTTTAGTTCAATATGTGCTTTCACCTGTCCTATCAAATGACTGAGGAAATGGTATCCAAACAGGCTCATACAATCTCAATATAAGTTCAAAATGCAAAAATATGCATGAAAAGTAGCTAAAATATTGTAAACAAAATATTCAGTTACAGAATAAGCTATACAAAATTCAAACTCGGTGAGAAATGTAAATTGTAATGTATTATCCTAATGATCCAAACATTACTTGGAAGATTTGTCAAGGCCATCAAAATGTCAGGGACAACATACCTCAattggaaaaaaaaaatatatgtcatATTTAAAAGTAACAATCATGCACATAATAAAAATCATTATTCTTACATTGTTCTGTAGCAGAGTGCAGAAGGGTATCGAGTAGCCTTACTTATTAATTTCCAACTAGACACGAGTTCAAAACTAAACTTAAAAATAACATTATATCCATAATATGTAGACCAAACACTTAAGACTTGACTaaaacaaacataaaaaaatgactaacaaaaacaaaaatgcgTGGGTTAGTTTATCATGGCACAACATCTGTTAAGTTAATACCGAGTCCTGTAGCTGAAATGTTTTGTGTAGATTTCACAAGTACATAGTGTTTGCTCCTGCCTTTCCTCTGACATCTCAAAAGTCTTCATCGAAGTTTGTTTGGCCATAAATGCACATTTCCAGTTTTCCTCCAATTACAATTGCACTTCACTCAGGCTTGGAATGCATTCAGGGCAATACGAAGAGACTGGTCATGTCTGAAGCAGAGAGCCCTCTACCTAGGACTGTGGACCTCTGTGCCCAACACCGTTATGTCCTGGTCGAGTCATGTACATATCTATATAGCTGTAACATCATAGCACATGTGTCTCAGCCAATCCGGCAGATGGCTCTCATCCTCTCTTACAGAAGCATTTTCAACCAGACTGCTGACAGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929074 lncRNA upstream 426 52366953 ~ 52371758 (+) True G816873
TU929073 lncRNA upstream 5786 52364640 ~ 52366398 (+) True G816872
TU928973 lncRNA upstream 119306 52204844 ~ 52252878 (+) True LOC118966072
TU929001 lncRNA upstream 122037 52249545 ~ 52250147 (+) True LOC110531200
TU928964 lncRNA upstream 172830 52198963 ~ 52199354 (+) True G816788
TU929066 lncRNA downstream 50314 52425357 ~ 52443755 (+) True G816865
TU929117 lncRNA downstream 54943 52429986 ~ 52431199 (+) True G816914
TU929132 lncRNA downstream 115953 52490996 ~ 52491313 (+) True G816929
TU929134 lncRNA downstream 117592 52492635 ~ 52492840 (+) True G816931
TU929137 lncRNA downstream 119502 52494545 ~ 52494810 (+) True G816934
XR_002474822.2 mRNA upstream 46260 52323001 ~ 52325924 (+) False LOC110532349
XM_021616155.2 mRNA upstream 77328 52260180 ~ 52294856 (+) False LOC110532344
XM_021616200.2 mRNA downstream 110480 52485523 ~ 52488233 (+) False sike1
XM_036988302.1 mRNA downstream 110506 52485549 ~ 52488233 (+) True sike1
XM_036988303.1 mRNA downstream 127954 52502997 ~ 52504594 (+) True LOC118936401
XM_036988304.1 mRNA downstream 138468 52513511 ~ 52514463 (+) True htr6
XM_036988306.1 mRNA downstream 175084 52550127 ~ 52559520 (+) False vwa1
TU929026 other upstream 46544 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1025690 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1293242 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1571803 50796214 ~ 50800381 (+) False G815428
TU929242 other downstream 351378 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2351828 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2858215 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 3155994 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 3322597 55697640 ~ 55697978 (+) True G820944

Expression Profile