RNA id: TU929175


Basic Information

Item Value
RNA id TU929175
length 1891
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G816969
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52570934 ~ 52572824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTATACCCCAAAATGTAAACCTACCATGTTCTTTGCTAAATTTATATCGTATGTCAGTCGATTCATAAAAAATATAACATCCTGATGGCACTAAACGTTATCGTATCTCTCTGTTATTCCTTAGAATTCATCCGGTTTAGGTGACTTTCTCTTCtatgatacatttatttaaatacgACTCCCGtctcaatacattattccagCAGATCATTTTGGGCAACACAACATATTACATCGAAATTGCCTCGCCATTATTCTCTCAATTCAACCTAAACAACCTTGTAAAAAGTTCACTAGCGACCGTATTTTtccaggcaaaacatacaaatGGTTGAATTACAATCTAAAATCATTTTTGTCTATCAGTGCCAAGGCAGAGATACGAATCTCAGTCTCCCACGTTGTAGGCAACAACTTTACCACTGAACCACCAACACAATTACAATAATTGAGTTTCCTCGCAAATAActgtgttggatttgtcccaaacacaacgctttgttttcaggacataaagttaatttctttggcaatattaaaataaaaagagtttcactttagtgccttattgcaaacaggatgcatgttttggaatgtattttattctgtacaggcttctagTTAATTATTTgtgtgatttttttaaatgtatttatttatcaggGTGTGatgcagcacccctacttccaaCAGCTATgatatatttgtagtgactgggtgtattaatacagcatccaaagtgtaattaataacttaaccatgctcaaagggatattcaatatctgcttttgttttacccatctaccaataggtgcccttctttgtgaggcattggaaaacctctctggtctttgtggttgaatctgtgtttgaaattcactgctcaactgagagattgtttgtatgtgtggggtacagggatgaggtagttattcaaaaataatgttaaacactattattgagtccatgcaacttattatgtgacttgttaagcctAAATTTACTCCTGAACGTTAtgcttgcctaaacaaagggggtgaatacttatgcaacaactagattttagttatttaatttgtaaacatttgtaaaattgtattttcactttgacattatagagtATCTTGTGTAGATCACCATTACatctatttcaatcccactttgaaacacaacaacatttaaaaaatctaaaggggatgaatacttatgATACCCACTGTAGGTCTGCAGAGGAAATATACATTATTCTACCAAATTCCTTTGACCATgttcatactgtactgtgtgtagatctGTTCACAGTATCTGGCTCTATTTACTGCTGGTCTCTGCTGCCTCCCTGTGGAAGTTGTACTGATGTGTTTTAGATCTACAAATTTTTAGATGCATTCAAGGTTCTAGGTTGGTTCATATTCAATAAATTGGGAGTTGTACATCAGTTAAGACACAGGGACTGAATGCCTTTGACTATTTATTGAGGATCGGGATGCTGATTGGAGTAATTCATTAAGGAAGGGTTGATAACAAAAGGGATTGCAGAAATTAGGATGAACATGAATCAGATGTAATCAGATGTATGCTGATTGGCGAGGGAAAGTGATTGGTTGGAAATGGAGGTTGTCAAAGGATGAGTCTTATTTCATGGCCCTCACAATATTCTAattttctcttctccctctttgcCATTTTCGCCTCctgctttttttattttaattgttgCTTCCTTATTTTCTTCTGCCTCTTCCTTCTTCTCATTCAATCGTTTTTTTCTCCTCAGCTCTCTTTTTTGCCTCCTACTGCACTTGCTTCTTTTCCTCCTCTTTTTCCCACACTATCCTTATCttatattttctccctctctttatccctcattctctgtttctcccAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929178 lncRNA upstream 788 52569063 ~ 52570146 (+) True G816972
TU929168 lncRNA upstream 25754 52544962 ~ 52545180 (+) True G816962
TU929163 lncRNA upstream 29110 52541601 ~ 52541824 (+) True G816957
TU929162 lncRNA upstream 30495 52540069 ~ 52540439 (+) True G816956
TU929154 lncRNA upstream 41688 52528408 ~ 52529246 (+) True G816951
TU929187 lncRNA downstream 15609 52588433 ~ 52588713 (+) True G816981
TU929191 lncRNA downstream 19226 52592050 ~ 52592363 (+) True G816985
TU929194 lncRNA downstream 23160 52595984 ~ 52596584 (+) True G816988
TU929195 lncRNA downstream 23988 52596812 ~ 52597039 (+) True G816989
TU929223 lncRNA downstream 74110 52646934 ~ 52647156 (+) True G817016
XM_021616203.2 mRNA upstream 3409 52550127 ~ 52567525 (+) True vwa1
XM_036988306.1 mRNA upstream 11414 52550127 ~ 52559520 (+) False vwa1
XM_036988304.1 mRNA upstream 56471 52513511 ~ 52514463 (+) True htr6
XM_036988303.1 mRNA upstream 66340 52502997 ~ 52504594 (+) True LOC118936401
XM_036988302.1 mRNA upstream 82701 52485549 ~ 52488233 (+) True sike1
XM_021616208.2 mRNA downstream 33619 52606443 ~ 52621080 (+) True LOC110532365
XR_002474827.2 mRNA downstream 86850 52659674 ~ 52663309 (+) False LOC110532366
XR_005053291.1 mRNA downstream 86850 52659674 ~ 52663309 (+) False LOC110532366
XR_002474825.2 mRNA downstream 87301 52660125 ~ 52663309 (+) False LOC110532366
XM_036986953.1 mRNA downstream 108687 52681511 ~ 52684202 (+) True LOC110531201
TU929026 other upstream 245294 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1224440 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1491992 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1770553 50796214 ~ 50800381 (+) False G815428
TU929242 other downstream 153597 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2154047 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2660434 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 2958213 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 3124816 55697640 ~ 55697978 (+) True G820944

Expression Profile