RNA id: TU929194


Basic Information

Item Value
RNA id TU929194
length 601
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G816988
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52595984 ~ 52596584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacaccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttgttcttgccactcttccataaaggccagatttgtgcaatatatgactgattgttgtcctatggacagagtctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929191 lncRNA upstream 3621 52592050 ~ 52592363 (+) True G816985
TU929187 lncRNA upstream 7271 52588433 ~ 52588713 (+) True G816981
TU929175 lncRNA upstream 23160 52570934 ~ 52572824 (+) True G816969
TU929178 lncRNA upstream 25838 52569063 ~ 52570146 (+) True G816972
TU929168 lncRNA upstream 50804 52544962 ~ 52545180 (+) True G816962
TU929195 lncRNA downstream 228 52596812 ~ 52597039 (+) True G816989
TU929223 lncRNA downstream 50350 52646934 ~ 52647156 (+) True G817016
TU929229 lncRNA downstream 58075 52654659 ~ 52654926 (+) True G817021
TU929233 lncRNA downstream 64158 52660742 ~ 52661046 (+) True LOC110532366
TU929442 lncRNA downstream 436555 53033139 ~ 53033358 (+) True G817215
XM_021616203.2 mRNA upstream 28459 52550127 ~ 52567525 (+) True vwa1
XM_036988306.1 mRNA upstream 36464 52550127 ~ 52559520 (+) False vwa1
XM_036988304.1 mRNA upstream 81521 52513511 ~ 52514463 (+) True htr6
XM_036988303.1 mRNA upstream 91390 52502997 ~ 52504594 (+) True LOC118936401
XM_036988302.1 mRNA upstream 107751 52485549 ~ 52488233 (+) True sike1
XM_021616208.2 mRNA downstream 9859 52606443 ~ 52621080 (+) True LOC110532365
XR_002474827.2 mRNA downstream 63090 52659674 ~ 52663309 (+) False LOC110532366
XR_005053291.1 mRNA downstream 63090 52659674 ~ 52663309 (+) False LOC110532366
XR_002474825.2 mRNA downstream 63541 52660125 ~ 52663309 (+) False LOC110532366
XM_036986953.1 mRNA downstream 84927 52681511 ~ 52684202 (+) True LOC110531201
TU929026 other upstream 270344 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1249490 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1517042 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1795603 50796214 ~ 50800381 (+) False G815428
TU929242 other downstream 129837 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2130287 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2636674 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 2934453 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 3101056 55697640 ~ 55697978 (+) True G820944

Expression Profile