RNA id: TU931854


Basic Information

Item Value
RNA id TU931854
length 1236
lncRNA type intronic
GC content 0.41
exon number 1
gene id G819416
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 54255764 ~ 54256999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacatttttatttacaatgacggcctaccaaaagccaaaaggcctcctgcggggatgggggattaaaaataaaaatgtaggacaaaacatacatcacaacgagagagacaccacaacactacataaagagagacctaagacaacacagcatggcagcaacacatgacaacacagcatggtagcaacacaacatgacaacaatacagtagcaacacaacatggcagcagcacaaagcATGATACAAACATTATTTGGCACAGACAACAGCTCCAAAGTCGCTGGAAGACATTTTCAATCTTTGCCTGACTGACGCATGAACAGGTTTCAGATGTTATATACGGAAGAGTTACTCTGTCAAATTTCCCCCAAAAGGAGGCTTAGTGTCGACATGCATTGACAATGCAGCTCAAATAGAGCATTTACATTCTATTCTAATATTTCtatttacagtggcaagaaaaattaTATGAaccctggatttctgcataattCGGTCATGAAATTTGATTcctctaggtcacaacaatagacaaacaaagtctgcttaaactaataacacaagaAAACGTATAAttttatgtctttattgaacacaccgtgtaaacattcacagtgccgGGTGGGAAaaatgtgaacccttggatttaataactggttgaccctcctttggtagcaataacctcaacaaaatgttttctgtagttgcggatcagacctgcacaacagtcaggaggaattttggaccattcctctttacaaaactgtttcagttcagcaatagtcttgggatgtctggtgtgaactgttcTCTTGAGGTCataccacagcatctcaatcgggttgaggtcaggacttctgttgaagccattctgttgttggtttacttctgtgttttgggtcgttgtcctgttgcatcacacaacttctgttgagcttaaattggcggacagatagtcttacattctcctgcaaaatgtcttgataaacttgggaattcatttttccgtcgatgatagcaagctgtccaggccctgagagagcaaagcagccccaaaccatgatgctccctccaccatactttacagttgggattaagttttgatgttggtgtgctgtgccttcttttctccacacatagtgttgtgtgttccttccaaacaactaaactttagtttcatctgtccacaaaatattttgccagtagtgctgtggaacatccaggtgcacttttgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU931850 lncRNA upstream 1285 54250704 ~ 54254479 (+) True G819412
TU931846 lncRNA upstream 6180 54247792 ~ 54249584 (+) False LOC110532396
TU931848 lncRNA upstream 6267 54247563 ~ 54249497 (+) False LOC110532396
TU931855 lncRNA downstream 113 54257112 ~ 54257452 (+) True G819417
TU931856 lncRNA downstream 518 54257517 ~ 54257963 (+) True G819418
TU931859 lncRNA downstream 6379 54263378 ~ 54263601 (+) True G819421
TU931860 lncRNA downstream 7162 54264161 ~ 54264423 (+) True G819422
TU931862 lncRNA downstream 11202 54268201 ~ 54268422 (+) True G819424
XM_021616271.2 mRNA upstream 7849 54245323 ~ 54247915 (+) False LOC110532396
XM_021616266.2 mRNA upstream 16258 54234796 ~ 54239506 (+) False LOC110532392
XM_021616270.2 mRNA downstream 38023 54295022 ~ 54306173 (+) True LOC110532395
XM_036988340.1 mRNA downstream 669729 54926728 ~ 54934570 (+) True twist3
XM_021616281.2 mRNA downstream 935354 55192353 ~ 55207365 (+) False LOC110532404
XM_036988349.1 mRNA downstream 936555 55193554 ~ 55207365 (+) True LOC110532404
XM_036988353.1 mRNA downstream 960607 55217606 ~ 55224372 (+) False LOC110532406
TU929242 other upstream 1528244 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 1930124 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 2909270 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 3176822 51078447 ~ 51078942 (+) True G815610
TU927551 other upstream 3455383 50796320 ~ 50800381 (+) True G815428
TU932380 other downstream 469872 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 976259 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 1274038 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 1440641 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 1717043 55974042 ~ 55975316 (+) True G821363

Expression Profile