RNA id: TU931869



Basic Information


Item Value
RNA id TU931869
length 201
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G819431
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 54276832 ~ 54277032 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCAACCCTCCAGGAGTGAGAGTAACAACAATCATGGTTGCCTTAAGTGTTTACCTTCATGACGTTGTCCAGAGTGAAGCCTGAGTTGTCTGTACCCAGTTCTCCCAGCAGCTTCTCCAGTAGTTCAGCCCTGCTCAGGGCCTGCCGTGTGGGGATGTTGGATTTAATGGGCTTCACCAGCTCCCCAGGGACCAACTGCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU931866 lncRNA upstream 3004 54273328 ~ 54273828 (+) True G819428
TU931862 lncRNA upstream 8410 54268201 ~ 54268422 (+) True G819424
TU931860 lncRNA upstream 12409 54264161 ~ 54264423 (+) True G819422
TU931859 lncRNA upstream 13231 54263378 ~ 54263601 (+) True G819421
TU931856 lncRNA upstream 18869 54257517 ~ 54257963 (+) True G819418
TU931928 lncRNA downstream 94511 54371543 ~ 54371845 (+) True G819488
TU932104 lncRNA downstream 107390 54384422 ~ 54384646 (+) True G819661
TU932115 lncRNA downstream 117336 54394368 ~ 54394571 (+) True G819672
TU932136 lncRNA downstream 135797 54412829 ~ 54413052 (+) True G819693
TU932138 lncRNA downstream 137349 54414381 ~ 54414622 (+) True G819695
XM_021616271.2 mRNA upstream 28917 54245323 ~ 54247915 (+) False LOC110532396
XM_021616266.2 mRNA upstream 37326 54234796 ~ 54239506 (+) False LOC110532392
XM_021616270.2 mRNA downstream 17990 54295022 ~ 54306173 (+) True LOC110532395
XM_036988340.1 mRNA downstream 649696 54926728 ~ 54934570 (+) True twist3
XM_021616281.2 mRNA downstream 915321 55192353 ~ 55207365 (+) False LOC110532404
XM_036988349.1 mRNA downstream 916522 55193554 ~ 55207365 (+) True LOC110532404
XM_036988353.1 mRNA downstream 940574 55217606 ~ 55224372 (+) False LOC110532406
TU929242 other upstream 1549312 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 1951192 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 2930338 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 3197890 51078447 ~ 51078942 (+) True G815610
TU927551 other upstream 3476451 50796320 ~ 50800381 (+) True G815428
TU932380 other downstream 449839 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 956226 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 1254005 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 1420608 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 1697010 55974042 ~ 55975316 (+) True G821363

Expression Profile