RNA id: TU931928


Basic Information

Item Value
RNA id TU931928
length 303
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G819488
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 54371543 ~ 54371845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACGGGAGGAGTCAGAAAGTAATCGTTGCATACTCTGTGACATGCAAGAGTTTACGAACACAAACTGTTCTATGAATAGCACACCTACAGTAATAATGACCTTTTCACCTGGCTTGCCTAGAAACAGCATCAACCCATTCTACCTTTGTTAGACCTGTGCATTGAGCACCTGAGATAGAAAATGTTACCAAGAGACATTCCCACAAAAGAGTAGACTCATCTGACCATTATCCTCACGTTTGAACAGggaatattttttttcatttttaaacaTGTTGCTCCATTTAGTCCTAGAAATGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU931869 lncRNA upstream 94511 54276832 ~ 54277032 (+) True G819431
TU931866 lncRNA upstream 97715 54273328 ~ 54273828 (+) True G819428
TU931862 lncRNA upstream 103121 54268201 ~ 54268422 (+) True G819424
TU931860 lncRNA upstream 107120 54264161 ~ 54264423 (+) True G819422
TU931859 lncRNA upstream 107942 54263378 ~ 54263601 (+) True G819421
TU932104 lncRNA downstream 12577 54384422 ~ 54384646 (+) True G819661
TU932115 lncRNA downstream 22523 54394368 ~ 54394571 (+) True G819672
TU932136 lncRNA downstream 40984 54412829 ~ 54413052 (+) True G819693
TU932138 lncRNA downstream 42536 54414381 ~ 54414622 (+) True G819695
TU932139 lncRNA downstream 42847 54414692 ~ 54415076 (+) True G819696
XM_021616270.2 mRNA upstream 65370 54295022 ~ 54306173 (+) True LOC110532395
XM_021616271.2 mRNA upstream 123628 54245323 ~ 54247915 (+) False LOC110532396
XM_021616266.2 mRNA upstream 132037 54234796 ~ 54239506 (+) False LOC110532392
XM_036988340.1 mRNA downstream 554883 54926728 ~ 54934570 (+) True twist3
XM_021616281.2 mRNA downstream 820508 55192353 ~ 55207365 (+) False LOC110532404
XM_036988349.1 mRNA downstream 821709 55193554 ~ 55207365 (+) True LOC110532404
XM_036988353.1 mRNA downstream 845761 55217606 ~ 55224372 (+) False LOC110532406
XM_036988352.1 mRNA downstream 845776 55217621 ~ 55224372 (+) False LOC110532406
TU929242 other upstream 1644023 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 2045903 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 3025049 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 3292601 51078447 ~ 51078942 (+) True G815610
TU927551 other upstream 3571162 50796320 ~ 50800381 (+) True G815428
TU932380 other downstream 355026 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 861413 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 1159192 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 1325795 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 1602197 55974042 ~ 55975316 (+) True G821363

Expression Profile