RNA id: TU932104


Basic Information

Item Value
RNA id TU932104
length 225
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G819661
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 54384422 ~ 54384646 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAAATTCTACACTCAACCTCTTACCCAAAACAACTCCTGTAACTTCACTCAATTCATAGCTGTTTGAGTCTCAGAACATTTCCACAATGCTCAAGAACAATTagagcaacatttcactgtccacTCTGACTTTAAACAGGAGTCAATATTAATGTCTGTCAAAGATAGACCTTTTGACTTCCTGTCTTGTCAGACCCCCTATACCTACCTTGCAGTATCACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU931928 lncRNA upstream 12577 54371543 ~ 54371845 (+) True G819488
TU931869 lncRNA upstream 107390 54276832 ~ 54277032 (+) True G819431
TU931866 lncRNA upstream 110594 54273328 ~ 54273828 (+) True G819428
TU931862 lncRNA upstream 116000 54268201 ~ 54268422 (+) True G819424
TU931860 lncRNA upstream 119999 54264161 ~ 54264423 (+) True G819422
TU932115 lncRNA downstream 9722 54394368 ~ 54394571 (+) True G819672
TU932136 lncRNA downstream 28183 54412829 ~ 54413052 (+) True G819693
TU932138 lncRNA downstream 29735 54414381 ~ 54414622 (+) True G819695
TU932139 lncRNA downstream 30046 54414692 ~ 54415076 (+) True G819696
TU932144 lncRNA downstream 34392 54419038 ~ 54419660 (+) True G819701
XM_021616270.2 mRNA upstream 78249 54295022 ~ 54306173 (+) True LOC110532395
XM_021616271.2 mRNA upstream 136507 54245323 ~ 54247915 (+) False LOC110532396
XM_021616264.2 mRNA upstream 144916 54234814 ~ 54239506 (+) False LOC110532392
XM_036988340.1 mRNA downstream 542082 54926728 ~ 54934570 (+) True twist3
XM_021616281.2 mRNA downstream 807707 55192353 ~ 55207365 (+) False LOC110532404
XM_036988349.1 mRNA downstream 808908 55193554 ~ 55207365 (+) True LOC110532404
XM_036988353.1 mRNA downstream 832960 55217606 ~ 55224372 (+) False LOC110532406
XM_036988352.1 mRNA downstream 832975 55217621 ~ 55224372 (+) False LOC110532406
TU929242 other upstream 1656902 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 2058782 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 3037928 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 3305480 51078447 ~ 51078942 (+) True G815610
TU927551 other upstream 3584041 50796320 ~ 50800381 (+) True G815428
TU932380 other downstream 342225 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 848612 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 1146391 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 1312994 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 1589396 55974042 ~ 55975316 (+) True G821363

Expression Profile