RNA id: TU934075



Basic Information


Item Value
RNA id TU934075
length 342
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G821464
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56151186 ~ 56151527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTtattgctgccaccaccatgcttcaccgtagggatggtgccaggtttcctccaaacgtgacgcttgactttcaagccaaagagttcaatcttggttttgtcagaccagaaaatcttgttttgcatggtctgagagtcctttgggcGCCTTTTGGAAAAACTCCAagcggctgtcatgtgccttttactgaggagtggcttccgtctggccactctaccataaaggcctgattggtggagttctgcagagatggttgtccttctggaaggttctcccatctccacagaggaaatctggagctctgtcagagtgaccatcgggttattggtcacctccttgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU934070 lncRNA upstream 6056 56144816 ~ 56145130 (+) True G821459
TU934058 lncRNA upstream 39178 56103492 ~ 56112008 (+) True LOC110532428
TU934040 lncRNA upstream 62203 56087603 ~ 56088983 (+) True G821433
TU934012 lncRNA upstream 95215 56052203 ~ 56055971 (+) False G821408
TU934013 lncRNA upstream 95215 56052203 ~ 56055971 (+) True G821408
TU934077 lncRNA downstream 1000 56152527 ~ 56152755 (+) True G821466
TU934088 lncRNA downstream 11447 56162974 ~ 56163181 (+) True G821476
TU934089 lncRNA downstream 11894 56163421 ~ 56163755 (+) True G821477
TU934132 lncRNA downstream 73984 56225511 ~ 56231409 (+) True G821520
TU934827 lncRNA downstream 352687 56504214 ~ 56504475 (+) True G822181
XM_021616322.2 mRNA upstream 20773 56125754 ~ 56130413 (+) False LOC110532427
XM_021616321.2 mRNA upstream 26973 56119005 ~ 56124213 (+) False LOC110532426
LOC110532428 mRNA upstream 39142 56103565 ~ 56112044 (+) False LOC110532428
XM_021616317.2 mRNA upstream 99198 56042832 ~ 56051988 (+) True LOC110532424
XM_036988387.1 mRNA upstream 116033 56028537 ~ 56035153 (+) True LOC110532421
XM_036988394.1 mRNA downstream 95183 56246710 ~ 56463547 (+) True LOC110531212
XM_036988396.1 mRNA downstream 439164 56590691 ~ 56641983 (+) False LOC110532433
XM_036988398.1 mRNA downstream 439164 56590691 ~ 56641983 (+) False LOC110532433
XM_036988397.1 mRNA downstream 439165 56590692 ~ 56641983 (+) False LOC110532433
XM_036988399.1 mRNA downstream 439165 56590692 ~ 56641983 (+) False LOC110532433
TU934050 other upstream 18250 56126461 ~ 56132936 (+) True LOC110532427
TU934051 other upstream 27001 56119119 ~ 56124185 (+) True LOC110532426
TU934014 other upstream 87531 56061706 ~ 56063655 (+) True G821409
TU933965 other upstream 175870 55974042 ~ 55975316 (+) True G821363
TU933495 other upstream 453208 55697640 ~ 55697978 (+) True G820944
TU934932 other downstream 421080 56572607 ~ 56572957 (+) True G822283
TU935064 other downstream 611098 56762625 ~ 56763540 (+) True G822404
TU935738 other downstream 1190874 57342401 ~ 57915534 (+) False LOC110532462
TU936157 other downstream 1877092 58028619 ~ 58028857 (+) True G823373
TU936266 other downstream 2053736 58205263 ~ 58244984 (+) True G823467

Expression Profile