RNA id: TU934919



Basic Information


Item Value
RNA id TU934919
length 222
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G822270
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56563444 ~ 56563665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTTTATTTagtgatcaatttattaaagtggtcagTGATATGAGTCTCTATGTAGGAAGTAGCCTCTCttagttagtgattgctgtttagcagtctgatggccttgagatagaagctgtttttcagtctctcggccccagctttgatgcacctgtactgatctcgccttctgggtggtagaggggtgaacaggcagtggctcgggtggttgttgtccttgat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU934918 lncRNA upstream 128 56563113 ~ 56563316 (+) True G822269
TU934917 lncRNA upstream 555 56562662 ~ 56562889 (+) True G822268
TU934867 lncRNA upstream 26406 56528736 ~ 56537038 (+) True G822220
TU934833 lncRNA upstream 55828 56507410 ~ 56507616 (+) True G822187
TU934829 lncRNA upstream 58097 56505113 ~ 56505347 (+) True G822183
TU934923 lncRNA downstream 1932 56565597 ~ 56565827 (+) True G822274
TU934940 lncRNA downstream 14778 56578443 ~ 56578656 (+) True G822291
TU935006 lncRNA downstream 87306 56650971 ~ 56651860 (+) True LOC110532435
TU935009 lncRNA downstream 88862 56652527 ~ 56654815 (+) True G822354
TU935017 lncRNA downstream 144898 56708563 ~ 56714483 (+) True G822360
XM_036988394.1 mRNA upstream 99897 56246710 ~ 56463547 (+) True LOC110531212
XM_021616322.2 mRNA upstream 433031 56125754 ~ 56130413 (+) False LOC110532427
XM_021616321.2 mRNA upstream 439231 56119005 ~ 56124213 (+) False LOC110532426
LOC110532428 mRNA upstream 451400 56103565 ~ 56112044 (+) False LOC110532428
XM_021616317.2 mRNA upstream 511456 56042832 ~ 56051988 (+) True LOC110532424
XM_036988396.1 mRNA downstream 27026 56590691 ~ 56641983 (+) False LOC110532433
XM_036988398.1 mRNA downstream 27026 56590691 ~ 56641983 (+) False LOC110532433
XM_036988397.1 mRNA downstream 27027 56590692 ~ 56641983 (+) False LOC110532433
XM_036988399.1 mRNA downstream 27027 56590692 ~ 56641983 (+) False LOC110532433
XM_036988400.1 mRNA downstream 27027 56590692 ~ 56641983 (+) False LOC110532433
TU934050 other upstream 430508 56126461 ~ 56132936 (+) True LOC110532427
TU934051 other upstream 439259 56119119 ~ 56124185 (+) True LOC110532426
TU934014 other upstream 499789 56061706 ~ 56063655 (+) True G821409
TU933965 other upstream 588128 55974042 ~ 55975316 (+) True G821363
TU933495 other upstream 865466 55697640 ~ 55697978 (+) True G820944
TU934932 other downstream 8942 56572607 ~ 56572957 (+) True G822283
TU935064 other downstream 198960 56762625 ~ 56763540 (+) True G822404
TU935738 other downstream 778736 57342401 ~ 57915534 (+) False LOC110532462
TU936157 other downstream 1464954 58028619 ~ 58028857 (+) True G823373
TU936266 other downstream 1641598 58205263 ~ 58244984 (+) True G823467

Expression Profile