RNA id: TU935038



Basic Information


Item Value
RNA id TU935038
length 572
lncRNA type intronic
GC content 0.44
exon number 2
gene id G822381
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56735304 ~ 56735899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttttaggctgggtttctatacagcactttgagatatcagctgatgtacgaagggctatataaatacatttgatttgatttgatttgaacatgggGATGAACATGGAGATGAACGTGGGAATGAGCATGGAGATGAACATGGGGATGAACATGGAGATGAACATGGGGGTGAACATGGAGATGTAAATGGGGATGAACATGGAGATGTAAATGGGGATGAACATGGAGATGTAAATGGGGATGAACATGGAGATGTAAATGGGGAGGAACATGGAGTTGAACATGGAGATGAACATGGGGGTGAACATGGAGATGTAAATGGGGGTGAACATGGGGTTGAACATGGGGATGAACATGGAGATGAACATGGGGATGAACATGGAGATGAACATGGGGATGAACATGGAGAGGAACATGGGGATGAACATGGAGATGAACATGGAGATGTAAATGAACATGGAGATGTAAATGGGGGTGAACATGGAGATGAACATGGGGATGAACATGGAGATGAACATGGGGATGAACATGGAGATGAACATGGGGATGAACATGGAGATGAACATGGAGATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU935036 lncRNA upstream 3078 56731793 ~ 56732226 (+) True G822379
TU935018 lncRNA upstream 5640 56721807 ~ 56729664 (+) True G822361
TU935019 lncRNA upstream 17142 56717130 ~ 56718162 (+) True G822362
TU935017 lncRNA upstream 20821 56708563 ~ 56714483 (+) True G822360
TU935009 lncRNA upstream 80489 56652527 ~ 56654815 (+) True G822354
TU935039 lncRNA downstream 2165 56738064 ~ 56738387 (+) True G822382
TU935047 lncRNA downstream 10808 56746707 ~ 56746918 (+) True G822390
TU935056 lncRNA downstream 22689 56758588 ~ 56758992 (+) False G822399
TU935058 lncRNA downstream 22689 56758588 ~ 56758904 (+) True G822399
TU935063 lncRNA downstream 25490 56761389 ~ 56761679 (+) True G822403
XM_036988408.1 mRNA upstream 26977 56661757 ~ 56708327 (+) False LOC110532437
XM_021616347.2 mRNA downstream 94845 56830744 ~ 56839626 (+) False LOC110532442
XM_021616348.2 mRNA downstream 96486 56832385 ~ 56839626 (+) False LOC110532442
XM_021616349.2 mRNA downstream 96486 56832385 ~ 56839626 (+) True LOC110532442
XM_036988433.1 mRNA downstream 103818 56839717 ~ 56863877 (+) True LOC110532441
XM_021616354.2 mRNA downstream 178683 56914582 ~ 56946999 (+) False LOC110532445
TU934932 other upstream 162347 56572607 ~ 56572957 (+) True G822283
TU934050 other upstream 602368 56126461 ~ 56132936 (+) True LOC110532427
TU934051 other upstream 611119 56119119 ~ 56124185 (+) True LOC110532426
TU934014 other upstream 671649 56061706 ~ 56063655 (+) True G821409
TU933965 other upstream 759988 55974042 ~ 55975316 (+) True G821363
TU935064 other downstream 26726 56762625 ~ 56763540 (+) True G822404
TU935738 other downstream 606502 57342401 ~ 57915534 (+) False LOC110532462
TU936157 other downstream 1292720 58028619 ~ 58028857 (+) True G823373
TU936266 other downstream 1469364 58205263 ~ 58244984 (+) True G823467
TU936255 other downstream 1511215 58247114 ~ 58250307 (+) True G823459

Expression Profile