RNA id: TU935047



Basic Information


Item Value
RNA id TU935047
length 212
lncRNA type intronic
GC content 0.54
exon number 1
gene id G822390
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56746707 ~ 56746918 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gatgggtgacacctggagaggggtggagacaagcacaaagcaggtgaaacagatcagggcgtgacatattctacgtgccttgctcaaagggcacacctagtcggctcagggattcggcAACCATTCGGTTACTGCCCCAATgcttttaaccactaggctacctgccgcgacctacatgtacagtatgcGGATGAGGTATGGGGGAAGTGAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU935039 lncRNA upstream 8320 56738064 ~ 56738387 (+) True G822382
TU935038 lncRNA upstream 10808 56735304 ~ 56735899 (+) True G822381
TU935036 lncRNA upstream 14481 56731793 ~ 56732226 (+) True G822379
TU935018 lncRNA upstream 17043 56721807 ~ 56729664 (+) True G822361
TU935019 lncRNA upstream 28545 56717130 ~ 56718162 (+) True G822362
TU935056 lncRNA downstream 11670 56758588 ~ 56758992 (+) False G822399
TU935058 lncRNA downstream 11670 56758588 ~ 56758904 (+) True G822399
TU935063 lncRNA downstream 14471 56761389 ~ 56761679 (+) True G822403
TU935072 lncRNA downstream 28924 56775842 ~ 56776112 (+) True G822412
TU935083 lncRNA downstream 42780 56789698 ~ 56789931 (+) True G822423
XM_036988408.1 mRNA upstream 38380 56661757 ~ 56708327 (+) False LOC110532437
XM_021616347.2 mRNA downstream 83826 56830744 ~ 56839626 (+) False LOC110532442
XM_021616348.2 mRNA downstream 85467 56832385 ~ 56839626 (+) False LOC110532442
XM_021616349.2 mRNA downstream 85467 56832385 ~ 56839626 (+) True LOC110532442
XM_036988433.1 mRNA downstream 92799 56839717 ~ 56863877 (+) True LOC110532441
XM_021616354.2 mRNA downstream 167664 56914582 ~ 56946999 (+) False LOC110532445
TU934932 other upstream 173750 56572607 ~ 56572957 (+) True G822283
TU934050 other upstream 613771 56126461 ~ 56132936 (+) True LOC110532427
TU934051 other upstream 622522 56119119 ~ 56124185 (+) True LOC110532426
TU934014 other upstream 683052 56061706 ~ 56063655 (+) True G821409
TU933965 other upstream 771391 55974042 ~ 55975316 (+) True G821363
TU935064 other downstream 15707 56762625 ~ 56763540 (+) True G822404
TU935738 other downstream 595483 57342401 ~ 57915534 (+) False LOC110532462
TU936157 other downstream 1281701 58028619 ~ 58028857 (+) True G823373
TU936266 other downstream 1458345 58205263 ~ 58244984 (+) True G823467
TU936255 other downstream 1500196 58247114 ~ 58250307 (+) True G823459

Expression Profile