RNA id: TU935058



Basic Information


Item Value
RNA id TU935058
length 317
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G822399
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56758588 ~ 56758992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGGACAGCAACATTTAGCTCCTCCTATCTATGCTTAAAGTCTCCCCCTATATTCCATAAGGAGTTAAATCCAGGGAGGCAAAAATAGTTGGAATACACCCTTACCAGAGCAATCTCCTTGATCCTATTATCCACAATGGACGGGCCAACCCATTCACCAGAGAGGCACTTAAGGGTTAATGTAACAGTGCCTTAATAACGTCTCTCGATTCGCTCGCCCATAAGCCCAAGAAACTGCAGTCCTCCTCTCACTGTTCCCACTGCAGCAGTACTCACTCTCctttacccacacacacatgaacgtacaaacacacacat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU935047 lncRNA upstream 11670 56746707 ~ 56746918 (+) True G822390
TU935039 lncRNA upstream 20201 56738064 ~ 56738387 (+) True G822382
TU935038 lncRNA upstream 22689 56735304 ~ 56735899 (+) True G822381
TU935036 lncRNA upstream 26362 56731793 ~ 56732226 (+) True G822379
TU935018 lncRNA upstream 28924 56721807 ~ 56729664 (+) True G822361
TU935063 lncRNA downstream 2485 56761389 ~ 56761679 (+) True G822403
TU935072 lncRNA downstream 16938 56775842 ~ 56776112 (+) True G822412
TU935083 lncRNA downstream 30794 56789698 ~ 56789931 (+) True G822423
TU935094 lncRNA downstream 45150 56804054 ~ 56804267 (+) True G822434
TU935095 lncRNA downstream 45776 56804680 ~ 56804905 (+) True G822435
XM_036988408.1 mRNA upstream 50261 56661757 ~ 56708327 (+) False LOC110532437
XM_021616347.2 mRNA downstream 71840 56830744 ~ 56839626 (+) False LOC110532442
XM_021616348.2 mRNA downstream 73481 56832385 ~ 56839626 (+) False LOC110532442
XM_021616349.2 mRNA downstream 73481 56832385 ~ 56839626 (+) True LOC110532442
XM_036988433.1 mRNA downstream 80813 56839717 ~ 56863877 (+) True LOC110532441
XM_021616354.2 mRNA downstream 155678 56914582 ~ 56946999 (+) False LOC110532445
TU934932 other upstream 185631 56572607 ~ 56572957 (+) True G822283
TU934050 other upstream 625652 56126461 ~ 56132936 (+) True LOC110532427
TU934051 other upstream 634403 56119119 ~ 56124185 (+) True LOC110532426
TU934014 other upstream 694933 56061706 ~ 56063655 (+) True G821409
TU933965 other upstream 783272 55974042 ~ 55975316 (+) True G821363
TU935064 other downstream 3721 56762625 ~ 56763540 (+) True G822404
TU935738 other downstream 583497 57342401 ~ 57915534 (+) False LOC110532462
TU936157 other downstream 1269715 58028619 ~ 58028857 (+) True G823373
TU936266 other downstream 1446359 58205263 ~ 58244984 (+) True G823467
TU936255 other downstream 1488210 58247114 ~ 58250307 (+) True G823459

Expression Profile