RNA id: TU935181



Basic Information


Item Value
RNA id TU935181
length 204
lncRNA type intronic
GC content 0.52
exon number 1
gene id G822481
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56891000 ~ 56891203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tggggctccatgcaagatctcacctcgtggagttgcaatgatcatgagaacggtgaggaatcagcccataactacacgggaggatcttgtcaatgatctcaaggcagctgggaccatagtcaccaagaaaacaataggtaacacactacgccgtgaagcactgaaatcctgcagcgcccgcaaggtccccctgctcaagaaagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU935171 lncRNA upstream 12257 56878383 ~ 56878743 (+) True G822474
TU935170 lncRNA upstream 13209 56877327 ~ 56877791 (+) True G822473
TU935168 lncRNA upstream 18283 56872385 ~ 56872717 (+) True G822471
TU935167 lncRNA upstream 19568 56870079 ~ 56871432 (+) True G822470
TU935099 lncRNA upstream 82456 56806388 ~ 56808544 (+) True G822438
TU935182 lncRNA downstream 511 56891714 ~ 56891979 (+) True G822482
TU935183 lncRNA downstream 1488 56892691 ~ 56907208 (+) True G822483
TU935160 lncRNA downstream 53093 56944296 ~ 56944813 (+) True G822463
TU935605 lncRNA downstream 203235 57094438 ~ 57094913 (+) True G822870
TU935623 lncRNA downstream 259069 57150272 ~ 57150495 (+) True G822888
XM_036988433.1 mRNA upstream 27123 56839717 ~ 56863877 (+) True LOC110532441
XM_021616347.2 mRNA upstream 51374 56830744 ~ 56839626 (+) False LOC110532442
XM_021616348.2 mRNA upstream 51374 56832385 ~ 56839626 (+) False LOC110532442
XM_021616349.2 mRNA upstream 51374 56832385 ~ 56839626 (+) True LOC110532442
XM_036988415.1 mRNA upstream 182673 56661866 ~ 56708327 (+) True LOC110532437
XM_021616354.2 mRNA downstream 23379 56914582 ~ 56946999 (+) False LOC110532445
XM_021616352.2 mRNA downstream 23391 56914594 ~ 56946999 (+) False LOC110532445
XM_021616353.2 mRNA downstream 23393 56914596 ~ 56946999 (+) False LOC110532445
XM_036988436.1 mRNA downstream 23862 56915065 ~ 56946999 (+) True LOC110532445
XM_021616357.2 mRNA downstream 56275 56947478 ~ 56948805 (+) True LOC110532447
TU935064 other upstream 127460 56762625 ~ 56763540 (+) True G822404
TU934932 other upstream 318043 56572607 ~ 56572957 (+) True G822283
TU934050 other upstream 758064 56126461 ~ 56132936 (+) True LOC110532427
TU934051 other upstream 766815 56119119 ~ 56124185 (+) True LOC110532426
TU934014 other upstream 827345 56061706 ~ 56063655 (+) True G821409
TU935738 other downstream 451198 57342401 ~ 57915534 (+) False LOC110532462
TU936157 other downstream 1137416 58028619 ~ 58028857 (+) True G823373
TU936266 other downstream 1314060 58205263 ~ 58244984 (+) True G823467
TU936255 other downstream 1355911 58247114 ~ 58250307 (+) True G823459
TU936293 other downstream 1497468 58388671 ~ 58390570 (+) True LOC110532478

Expression Profile