RNA id: TCONS_00005819


Basic Information

Item Value
RNA id TCONS_00005819
length 643
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id XLOC_001871
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6116294 ~ 6116936 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTACGACACGCATTCGATAATCGTTGGAGACCTCCAGACAGACCTCACCTTATCTTTAGGTAAGCAGACTCTTCTGAACAATCgtttgttttgtaatttgatgtgGTGAGATTTAAACACGTTCATGAATCTTGAGTATGCAGACATATTTCACACTCTCTCTGTCACTTTTCAGATTGCCTGGACCtgatttcccagtgtttggtCCGCAATCCAGAGAAGCGACTGCAGTTACATCAGTTAGAAGAGCACCGGTGGTTCAATCCAACGAGCCCAAATCCTGTGCAGCAGTGAGACAAGAGGAGGTAGAGGAACACACCGAGCACAAAACTACATCTTCAGTCTTTCTTTGCTTCATGCTATTCCTGTTctttcctcttctgctctttttAGAGTCACAAGTCTTATTTGACAGCCCTTCATATCACTGCTTAAataactttgtgttgtttttcttcattttagaaaacaCTAAAGAAGCGAAGAGGAGAACAGCAGCATTTCCAGaaatttcacaagactgttaaagttattaattactccctcatgtcattccaaacccctcaGACCTTACTTTTCAGTGTCAGTGTGTTGATGAGAGCTCTGtcctgcactgtgtgtgtgtccactgctgacgtttacc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005677 lncRNA upstream 235061 5880700 ~ 5881233 (+) True XLOC_001868
TCONS_00005818 lncRNA upstream 322768 5788407 ~ 5793526 (+) True XLOC_001867
TCONS_00005676 lncRNA upstream 528064 5587960 ~ 5588230 (+) True XLOC_001864
TCONS_00005817 lncRNA upstream 573153 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00003709 lncRNA downstream 223532 6340468 ~ 6350276 (+) False XLOC_001873
TCONS_00005820 lncRNA downstream 511683 6628619 ~ 6628997 (+) True XLOC_001877
TCONS_00005821 lncRNA downstream 527461 6644397 ~ 6644775 (+) True XLOC_001878
TCONS_00005822 lncRNA downstream 567482 6684418 ~ 6684796 (+) True XLOC_001880
TCONS_00005823 lncRNA downstream 637334 6754270 ~ 6755766 (+) True XLOC_001884
TCONS_00003701 mRNA upstream 81897 6013076 ~ 6034397 (+) False XLOC_001870
TCONS_00003703 mRNA upstream 83200 6024189 ~ 6033094 (+) True XLOC_001870
TCONS_00003699 mRNA upstream 83419 6010570 ~ 6032875 (+) False XLOC_001870
TCONS_00003700 mRNA upstream 92569 6010574 ~ 6023725 (+) False XLOC_001870
TCONS_00003702 mRNA upstream 94261 6013162 ~ 6022033 (+) False XLOC_001870
TCONS_00003704 mRNA downstream 4622 6121558 ~ 6313106 (+) False XLOC_001872
TCONS_00003705 mRNA downstream 4622 6121558 ~ 6313905 (+) True XLOC_001872
TCONS_00003706 mRNA downstream 201291 6318227 ~ 6363374 (+) False XLOC_001873
TCONS_00003707 mRNA downstream 201321 6318257 ~ 6359743 (+) False XLOC_001873
TCONS_00003708 mRNA downstream 201412 6318348 ~ 6375394 (+) False XLOC_001873
TCONS_00003693 other upstream 346682 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 963893 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 968712 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 1128811 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 1622936 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003731 other downstream 966835 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 1456380 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 2226252 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 2745585 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 2752532 8869468 ~ 8880126 (+) False XLOC_001922

Expression Profile

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