RNA id: TU939091



Basic Information


Item Value
RNA id TU939091
length 231
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G825866
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 60251309 ~ 60251680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GATGCGTATGAAGTCCTGTTTGTCGACTCGTAGGAAGTGGCAGTTGTCCTCTCTCAGGATGATGGTGGCTGCTCTGGGAGCATCGTTCACCAGGGCCAGCTGCCCAAAGTCTTCTCCCTCATGTAACGTCGTCACCAGGCCCTGCATCACatacCTTTCCATGTGTGATGACATTGACTGAGCCCTTCCAGATGATGTACCAGGAAGTACCTTTGTCTCCCTGACTGAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU938999 lncRNA upstream 19407 60230312 ~ 60231902 (+) True G825775
TU939065 lncRNA upstream 51737 60199080 ~ 60199572 (+) True G825841
TU939061 lncRNA upstream 59122 60191854 ~ 60192187 (+) True G825837
TU939026 lncRNA upstream 133217 60117754 ~ 60118092 (+) True G825802
TU939025 lncRNA upstream 133881 60117139 ~ 60117428 (+) True G825801
TU939628 lncRNA downstream 28701 60280381 ~ 60286964 (+) True G826319
TU939637 lncRNA downstream 45601 60297281 ~ 60351580 (+) True G826327
TU939646 lncRNA downstream 50918 60302598 ~ 60304205 (+) True LOC110531228
TU939739 lncRNA downstream 110152 60361832 ~ 60366876 (+) True G826419
TU939755 lncRNA downstream 125590 60377270 ~ 60377500 (+) True G826430
XM_036988561.1 mRNA upstream 22850 60144449 ~ 60228459 (+) True LOC110532566
XM_021616566.2 mRNA upstream 163307 60079288 ~ 60088002 (+) True LOC110532564
XM_021616563.2 mRNA upstream 173403 60065296 ~ 60077906 (+) False LOC110532563
XM_021616575.2 mRNA downstream 30101 60281781 ~ 60286078 (+) True LOC110532568
XM_036986962.1 mRNA downstream 37011 60288691 ~ 60303422 (+) False LOC110531228
XM_036988563.1 mRNA downstream 384843 60636523 ~ 61029723 (+) False LOC110531229
XM_036988562.1 mRNA downstream 384843 60636523 ~ 61072400 (+) False LOC110531229
XM_021616576.2 mRNA downstream 852087 61103767 ~ 61156703 (+) False LOC110532569
TU938963 other upstream 240884 60010009 ~ 60010425 (+) True G825749
TU938660 other upstream 652339 59598029 ~ 59598970 (+) True G825484
TU937994 other upstream 836296 59414147 ~ 59415013 (+) True G824936
TU937938 other upstream 868898 59377106 ~ 59382411 (+) True LOC110532530
TU937803 other upstream 1091113 59158581 ~ 59160196 (+) False LOC118966079
TU939835 other downstream 194350 60446030 ~ 60446534 (+) True G826505
TU939988 other downstream 311400 60563080 ~ 60563397 (+) True G826653
TU940086 other downstream 409689 60661369 ~ 60661906 (+) True G826751
TU940445 other downstream 960781 61212461 ~ 61251238 (+) True G827039
TU941829 other downstream 1937502 62189182 ~ 62190606 (+) True G828274

Expression Profile