RNA id: TU940011


Basic Information

Item Value
RNA id TU940011
length 275
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G826676
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 60590199 ~ 60590473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcttagcaaggggaatgaaatgagccgccttagagaacctatcgacaaccgtaagaataacagtcttccctgctgacgaaggcagtccggtgacaaaatctaaggcgatgtgagaccacggtcgagagggaataggaagcggcctgagacggccggcaggaggagagttaccggacttagtctgcgcgcagaccgaacaagcagccacgaaacgacgcgtgtcatgctcccgggtgggccaccagaaacgctggcgaatggaagcaagcgtaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU940009 lncRNA upstream 6497 60582825 ~ 60583702 (+) True G826674
TU940000 lncRNA upstream 18291 60571706 ~ 60571908 (+) True G826665
TU939911 lncRNA upstream 85611 60504378 ~ 60504588 (+) True G826580
TU939897 lncRNA upstream 104153 60485818 ~ 60486046 (+) True G826566
TU939895 lncRNA upstream 105871 60483947 ~ 60484328 (+) True G826564
TU940051 lncRNA downstream 26999 60617472 ~ 60617697 (+) True G826716
TU940054 lncRNA downstream 32951 60623424 ~ 60623663 (+) True G826719
TU940056 lncRNA downstream 35851 60626324 ~ 60626610 (+) True G826721
TU940088 lncRNA downstream 71737 60662210 ~ 60664954 (+) True G826752
TU940091 lncRNA downstream 75004 60665477 ~ 60665712 (+) True G826755
XM_036986962.1 mRNA upstream 286777 60288691 ~ 60303422 (+) False LOC110531228
XM_021616575.2 mRNA upstream 304121 60281781 ~ 60286078 (+) True LOC110532568
XM_036988561.1 mRNA upstream 361740 60144449 ~ 60228459 (+) True LOC110532566
XM_021616566.2 mRNA upstream 502197 60079288 ~ 60088002 (+) True LOC110532564
XM_021616565.2 mRNA upstream 512293 60065296 ~ 60077906 (+) True LOC110532563
XM_036988563.1 mRNA downstream 46050 60636523 ~ 61029723 (+) False LOC110531229
XM_036988562.1 mRNA downstream 46050 60636523 ~ 61072400 (+) False LOC110531229
XM_021616576.2 mRNA downstream 513294 61103767 ~ 61156703 (+) False LOC110532569
XM_021616577.2 mRNA downstream 513294 61103767 ~ 61156703 (+) True LOC110532569
XM_021616587.2 mRNA downstream 741631 61332104 ~ 61362738 (+) True ptpn22
TU939988 other upstream 26802 60563080 ~ 60563397 (+) True G826653
TU939835 other upstream 143665 60446030 ~ 60446534 (+) True G826505
TU938963 other upstream 579774 60010009 ~ 60010425 (+) True G825749
TU938660 other upstream 991229 59598029 ~ 59598970 (+) True G825484
TU937994 other upstream 1175186 59414147 ~ 59415013 (+) True G824936
TU940086 other downstream 70896 60661369 ~ 60661906 (+) True G826751
TU940445 other downstream 621988 61212461 ~ 61251238 (+) True G827039
TU941829 other downstream 1598709 62189182 ~ 62190606 (+) True G828274
TU942478 other downstream 2032766 62623239 ~ 62627842 (+) True LOC110532602
TU943081 other downstream 2975105 63565578 ~ 63597768 (+) True LOC110532619

Expression Profile