RNA id: TU940894


Basic Information

Item Value
RNA id TU940894
length 456
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G827458
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 61943934 ~ 61944525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGTTTATTTGATTATAAACGTGTTTTTGTTACAAAATCACTATACTAATAACCCTGGTACAATgttgacaaaataaatgtatctgATTTGCAGCTGTCTCAAAGGTTCTGCTACAGTACATATCCTCTTGCTGTGTGTAAATAAATGTATCTGATTTGCAGATGTCTCAAAGGTTCTGCTACAGTACATATCCTCTTGCTGTGTGTAAATAAACGCTTTATGTTCATATGTTGCAGAGACATTCTATTTGTCTGCCTTACCAGTCCTTGTTTGGTGTGATATGGTCACACTGGTGATTAACCTCTGATTACATATTGAGTCTGTTCAGTAACAGTGCTATTCTTTCGATTAAGTATGTGCATAACCTCATCACATAATTAGTCATAATATTTTGTCTTTGGAAGGACACACATCATTTCAAAGAGTAGGTTGGCTGCAGTCAGTGCTGTATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU940841 lncRNA upstream 73863 61865027 ~ 61870071 (+) True G827408
TU940789 lncRNA upstream 140426 61801797 ~ 61803508 (+) True G827357
TU940733 lncRNA upstream 215333 61728356 ~ 61728601 (+) True G827302
TU940661 lncRNA upstream 236693 61705692 ~ 61707241 (+) True G827242
TU940713 lncRNA upstream 256856 61686753 ~ 61687078 (+) True si:ch73-206d17.1
TU940855 lncRNA downstream 330 61944855 ~ 61945306 (+) True G827422
TU940857 lncRNA downstream 1370 61945895 ~ 61948613 (+) True G827423
TU941684 lncRNA downstream 50454 61994979 ~ 61995252 (+) True G828151
TU941705 lncRNA downstream 63670 62008195 ~ 62008645 (+) True G828172
TU941714 lncRNA downstream 70285 62014810 ~ 62015019 (+) True G828181
LOC110531232 mRNA upstream 1294 61937419 ~ 61942640 (+) True LOC110531232
trnaa-ugc-37 mRNA upstream 212767 61731094 ~ 61731167 (+) True trnaa-ugc-37
XM_021616590.2 mRNA upstream 256413 61678590 ~ 61687521 (+) False si:ch73-206d17.1
XM_021614389.2 mRNA downstream 140483 62085008 ~ 62093546 (+) False mul1b
XM_021614390.2 mRNA downstream 140723 62085248 ~ 62093546 (+) False mul1b
XM_036986932.1 mRNA downstream 141491 62086016 ~ 62093546 (+) False mul1b
NM_001281364.1 mRNA downstream 143807 62088332 ~ 62093241 (+) True mul1b
XM_021616605.2 mRNA downstream 228927 62173452 ~ 62186259 (+) False LOC110532588
TU940445 other upstream 692696 61212461 ~ 61251238 (+) True G827039
TU940086 other upstream 1282028 60661369 ~ 60661906 (+) True G826751
TU939988 other upstream 1380537 60563080 ~ 60563397 (+) True G826653
TU939835 other upstream 1497400 60446030 ~ 60446534 (+) True G826505
TU938963 other upstream 1933509 60010009 ~ 60010425 (+) True G825749
TU941829 other downstream 244657 62189182 ~ 62190606 (+) True G828274
TU942478 other downstream 678714 62623239 ~ 62627842 (+) True LOC110532602
TU943081 other downstream 1621053 63565578 ~ 63597768 (+) True LOC110532619
TU944593 other downstream 2369553 64314078 ~ 64315926 (+) False G830755
TU944595 other downstream 2369553 64314078 ~ 64316656 (+) True G830755