RNA id: TU941705



Basic Information


Item Value
RNA id TU941705
length 451
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G828172
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 62008195 ~ 62008645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTGatcctctacgactggaatagcgacataatctgcccgaggattccaacaggcccctcaggcgcgacgtccgctgaaggcccattctgctaaccacGGACTGCTAGCTAcatagagctacttggaaccctactaatccacgactggtctatcgacgtcaccgcacgaagaggcaaaaacagacttacctccATCGCGACATCCCCCAAAGGCCCTTATGCTAACTTTCTAGACCCGGTcggctaactgctagcttgctagccccagtctgctaactgctagcttgcttgccccggtctgctaactgatagcttgctagccccggtctgctaactgcttgcttgctaaccccgGTCTGCTAACTTTTAGCTTGCTAGCCCCAGTCTGCTAACTGATAGCTTGcttgccccggtctgctaactgcttgcttgctaaccccggtctgctaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU941684 lncRNA upstream 12943 61994979 ~ 61995252 (+) True G828151
TU940857 lncRNA upstream 59582 61945895 ~ 61948613 (+) True G827423
TU940855 lncRNA upstream 62889 61944855 ~ 61945306 (+) True G827422
TU940897 lncRNA upstream 63670 61943934 ~ 61944525 (+) False G827458
TU941714 lncRNA downstream 6165 62014810 ~ 62015019 (+) True G828181
TU941741 lncRNA downstream 47093 62055738 ~ 62060997 (+) False G828205
TU941742 lncRNA downstream 47093 62055738 ~ 62062734 (+) True G828205
TU941744 lncRNA downstream 47313 62055958 ~ 62060704 (+) False G828206
TU941745 lncRNA downstream 47313 62055958 ~ 62060704 (+) True G828206
LOC110531232 mRNA upstream 65555 61937419 ~ 61942640 (+) True LOC110531232
trnaa-ugc-37 mRNA upstream 277028 61731094 ~ 61731167 (+) True trnaa-ugc-37
XM_021616590.2 mRNA upstream 320674 61678590 ~ 61687521 (+) False si:ch73-206d17.1
XM_021614389.2 mRNA downstream 76363 62085008 ~ 62093546 (+) False mul1b
XM_021614390.2 mRNA downstream 76603 62085248 ~ 62093546 (+) False mul1b
XM_036986932.1 mRNA downstream 77371 62086016 ~ 62093546 (+) False mul1b
NM_001281364.1 mRNA downstream 79687 62088332 ~ 62093241 (+) True mul1b
XM_021616605.2 mRNA downstream 164807 62173452 ~ 62186259 (+) False LOC110532588
TU940445 other upstream 756957 61212461 ~ 61251238 (+) True G827039
TU940086 other upstream 1346289 60661369 ~ 60661906 (+) True G826751
TU939988 other upstream 1444798 60563080 ~ 60563397 (+) True G826653
TU939835 other upstream 1561661 60446030 ~ 60446534 (+) True G826505
TU938963 other upstream 1997770 60010009 ~ 60010425 (+) True G825749
TU941829 other downstream 180537 62189182 ~ 62190606 (+) True G828274
TU942478 other downstream 614594 62623239 ~ 62627842 (+) True LOC110532602
TU943081 other downstream 1556933 63565578 ~ 63597768 (+) True LOC110532619
TU944593 other downstream 2305433 64314078 ~ 64315926 (+) False G830755
TU944595 other downstream 2305433 64314078 ~ 64316656 (+) True G830755

Expression Profile