RNA id: TU946683


Basic Information

Item Value
RNA id TU946683
length 881
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G832521
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 66076323 ~ 66077203 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAACATTAATAACTTCCATCCATGGGCATCCAACATCAAGTAAGCAAATACCTAGTTTGTTTGGATTGCCCTGTGTTGAACTCCACATAGGGTTTTGCCACAGGGTTTTATCACGTCAAGGTAATAGGATTATGTTGTACAGGGATGGGGAAACTTCAGTCCTCTGGGGCCGGagtggtgtcacacttttcccccatccctagctaaCACAGCTGATGAAAACAATGGCATtttaaactgaagatcatgattagttgatttatTGGAGTGAGGCGTGTTAGCTGGGGCCAAATTGTGGCATcgatcaggcccccgaggactggagttgctgATACCTGGTGTAGCACTATGCAACCTCTAGTCCAGGGCTCGAGGATGTgggggaaacactgctctagactaTGCTGCTACCACTAGAAAGGCCCTGTGACAGCTCAACATCCAGTATGCTAGTGCAGAACGCTCACAGTTCTAGGCCTACTCACAAGATATCAGCCATGTCATTGTTTGAAGACTTCTGAGGCAAATCAAGTACagtatgtgtcacgccctgatctgtttcacctgtctttgggattgtctccacccacctccaggtgtcacctgttttccccattagtccctgggtatttatttctgtgttccctgtttgtctgttgcaagttcgtcttgtcaagtcaaccagcgtgtttttctgTGCGCCTTCTTTTTCTTATcgctcttttgctagtcctccaggtttttgacccttgcctgccttgactctgaacccgcctgtctgaccatactgcctgccctgaccttgagcctgcccgCCACTCTGTACCTCCCGGACTCTGACCttatgatcttttgcctgtccacgaccattctccgagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU946685 lncRNA downstream 14080 66061968 ~ 66062243 (-) True G832523
TU946671 lncRNA downstream 20629 66055397 ~ 66055694 (-) True G832517
TU946668 lncRNA downstream 24392 66051256 ~ 66051931 (-) True G832514
TU946665 lncRNA downstream 27304 66048794 ~ 66049019 (-) True G832511
TU946662 lncRNA downstream 31312 66044660 ~ 66045011 (-) True LOC110532695
TU946679 lncRNA upstream 749 66077952 ~ 66081390 (-) True G832520
TU946694 lncRNA upstream 31592 66108795 ~ 66109020 (-) True G832532
TU946717 lncRNA upstream 70620 66147823 ~ 66148026 (-) True G832549
TU946734 lncRNA upstream 83178 66160381 ~ 66160602 (-) True G832562
TU946737 lncRNA upstream 85393 66162596 ~ 66162939 (-) True G832565
XM_021616789.2 mRNA downstream 28593 66044662 ~ 66047730 (-) False LOC110532695
XM_021616792.2 mRNA downstream 182527 65883605 ~ 65893796 (-) True LOC110532698
XM_036988720.1 mRNA downstream 201112 65829202 ~ 65875211 (-) False LOC110532700
XM_036988723.1 mRNA downstream 201112 65829202 ~ 65875211 (-) True LOC110532700
XM_036988722.1 mRNA downstream 201113 65829202 ~ 65875210 (-) False LOC110532700
XM_021616787.2 mRNA upstream 4560 66081763 ~ 66104051 (-) False LOC110532694
XM_021616788.2 mRNA upstream 5092 66082295 ~ 66103735 (-) True LOC110532694
XM_021616785.2 mRNA upstream 50713 66127916 ~ 66147617 (-) False LOC110532692
XM_021616786.2 mRNA upstream 50713 66127916 ~ 66147617 (-) False LOC110532692
XM_036988730.1 mRNA upstream 151254 66228457 ~ 66430917 (-) False LOC110531240
TU946657 other downstream 40143 66035872 ~ 66036180 (-) True G832503
TU946633 other downstream 74589 66001219 ~ 66001734 (-) True G832480
TU946612 other downstream 129730 65946182 ~ 65946593 (-) True G832461
TU946537 other downstream 281133 65793857 ~ 65795190 (-) True G832401
TU946527 other downstream 294525 65776583 ~ 65781798 (-) True G832392
TU946673 other upstream 50713 66127916 ~ 66147605 (-) False LOC110532692
TU946674 other upstream 50713 66127916 ~ 66147685 (-) True LOC110532692
TU946916 other upstream 157788 66234991 ~ 66238174 (-) False LOC110531240
TU946914 other upstream 170900 66248103 ~ 66430769 (-) True LOC110531240
TU947239 other upstream 431515 66508718 ~ 66511566 (-) False G832991

Expression Profile