RNA id: TU946908


Basic Information

Item Value
RNA id TU946908
length 2692
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G832724
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 66224285 ~ 66227110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggaggagagaagggtggaggagagaaggctAGAAGAGAGAAGGCTGGAAGAGAGAAGGCTGGAAGAGAGAAGggtgggagagagaagggtggattATTTAGGAGGGGATATACTGAGTGCAGAGACTGGAACTGCCCACCTAGGCTAACTGAACTGACGAGGAGTTGAGTGGAGAACCAAAGGAAGAGGAGCCTGCCCTGCTGAACACTGCTTTAACACTATAATACTGAGTACTGAAAAGGCACAAAACAGATGAACAGGGGGAGGTACCACCTGAATTGGCATTTGTTTTCTGTTACAAAACGTTTTGAAACTTTCTGCCCCAATGAACACAACCCTAACAAAGATGTACACTACCCTTCCATGGAGAAGCAATGTGCTCTAATGTCTTACCTCTGTTCGGATATGGCGATGCAATGAGCAATTTGAGCGGAGAGAGTTAACGTGTTATTGTTAAgcgtaaaaaaaatgttttttacattACAGGGATATGTACAGTTAAAATTGATTGGGTTAGGAGTTCTTCCTAATCACAGATGACCTCACCAGGTAAAACTCTGGGTCTTatagtgctttcaagacaactgggaactctggggaaaaatcatgacgtcagtgatcttcaggtcggaaagttggCGCTCTAGAAAGAGGACTGAGTTCCTgaattggaattccgagttggatgacaatTATTTTCCTAATTCCCAGTTATCTTGAAgtgcactgaagtcggaagtctaaGAGTTCCCAGTTTCCatttgttttgaacgtggcattAAGTGTAGCGTAATGCATTTAGTCCTGgtgaggtcacatggtcaggatgAACTTCCTGGCCCTATTCAGTAAACGGAAAATGTGCCTGAAAATATTCCTTTTATGTTCTTCCAGAGAGAAGGAGGCCTTCAGAGGGTATTATAGTAGAGAGCCCCAAtgctaaatggacccctagaccctaCATCCTTTGTATGCATTTGTAGAGATCTCAGCGAATTGGACACATGTAAGTATATGGTAAAAATGCCATCtagtcaatcagtcagccagatGGTGCTCCTACCATACTGCGTATCTACTCATCTAAGATTTCCACAAGCGCCTATGTTGTAGGTGTCCATTTGGGACCGGGGAGAAGGACAATACAAATCCCTTCATATTAAAGAGCGCTAATTTAATGGTAATAATGGCTGTTGTCCTATTCGCTACCCTTCTCCTAAAGTGTGCAATTGTACACTCCCTAACATGGATTTAACAGGAATTGGCTGGTGTAAGGAGCATGGTGGAAACTTGCTTGTACCAATCCAATCCTTATAAGTGCATAAGAGGGAGTGTACACTCGGTAAAGGGTACAGAATCGGAATGAAACCAATCTCTGCTTGGGGAACAGGGTACGTACACGCCAGGTAGCGAGCTGGGATTAAAGTTTATCTGACAAGAGTCGTAGTTTAGTTTGGACTTTTTGTGTTTTTGTTGCATTGTTTAATTTTAATGTGTGAGAAATATGTTGGAGTATTGAGTAATATATCCTGATATGACAGAATATATGATTATATCAATGCCATTACTTAAGAGCTGACTGAGTCAGTTTATCCAACACTTCTCTTTTGAATAAATTGATCTTAATCCTGATCTTAATCTTAAACTTGATCTTGATTTGGTGGGGATGATTTGTAGTGTACTAGGATCAGTGCTCTTGTTCCTGTTGTTGTGTATCGGAAATGGTACCCTATATCCTAcgtgtatatagtgcactaagcccatagggctctggttaaaagtagtgcactatatagggaatagggtaccatttcagaTGCAGACTATGTAATATTGTGCGAGTTGAGACCTCTTCTCCCCATTCCCTACCAATCAGAGACCAGAGAAGCCCTGGCTGGAACAGAAGTGGCCTATCACCATACAAGAGAAAAACCTTAACACAGGCAGGGTGGCCTACCACAATAGAGGAGACAGACCTTAACCCGCCCATGCAGGCTCTAACGTTAGAGATATAAGCTTTTTCAACCTAATATCAACAAACAAATGATCCAACGGACTGATTTAAAGTGTTAGATTCTGCCACTGTTAGATTCATAACGTAGAAATACACGTGCTCATATCATAGTCACCCCAACTGGTACATACATCCTGATTCATTATTCAAAATGTTAAAACGTTTAACGTTAGATCTATTCATGAGAACTATTTTCTGGGCAGGTGTCCTGGTAGCTGTGTGTATGCAGTTAGCCTTATTCCATTCTTCTTATCTCCAGAGGCAAAggatgtgcatcccaaatggcaccatattgcTAATGAACTGCCCtgtgcaaaagtagtgcactacatagggaacagggtgccatttggaatgcattatagcagtgcactttatagggaatagggtgccgtgtgGGATGTACtgaaagtagtggactatatagggaataggattccatttggaatgcattaaagtagtgcactacatagggaatagggtgccatttgggatgcacacagagAAAACTATATATAGAGGCACTGGTGAAACCTTTTCATGTGGAATTGCAGCAATACCCAACTCATACTGGCTAATCTTGTTCATTGCAATAATACAAATCAACCAATAAAATATGTATGTGAGTTCAATATTACAAATGTcatttaaaataaacatttactTTATGAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU946752 lncRNA downstream 32891 66190958 ~ 66191394 (-) True G832580
TU946742 lncRNA downstream 52408 66171667 ~ 66171877 (-) True G832570
TU946737 lncRNA downstream 61346 66162596 ~ 66162939 (-) True G832565
TU946734 lncRNA downstream 63683 66160381 ~ 66160602 (-) True G832562
TU946717 lncRNA downstream 76259 66147823 ~ 66148026 (-) True G832549
TU946912 lncRNA upstream 490 66227600 ~ 66228183 (-) True G832725
TU946915 lncRNA upstream 48510 66275620 ~ 66277008 (-) True G832727
TU946975 lncRNA upstream 126115 66353225 ~ 66354690 (-) True G832780
TU946988 lncRNA upstream 146324 66373434 ~ 66379277 (-) True G832792
TU946994 lncRNA upstream 158982 66386092 ~ 66395574 (-) True G832798
XM_021616785.2 mRNA downstream 76668 66127916 ~ 66147617 (-) False LOC110532692
XM_021616786.2 mRNA downstream 76668 66127916 ~ 66147617 (-) False LOC110532692
XM_021616787.2 mRNA downstream 120234 66081763 ~ 66104051 (-) False LOC110532694
XM_021616788.2 mRNA downstream 120550 66082295 ~ 66103735 (-) True LOC110532694
XM_021616789.2 mRNA downstream 176555 66044662 ~ 66047730 (-) False LOC110532695
XM_036988730.1 mRNA upstream 1347 66228457 ~ 66430917 (-) False LOC110531240
XM_036988732.1 mRNA upstream 295552 66522662 ~ 66543277 (-) True LOC118966098
XR_002474877.2 mRNA upstream 359499 66586609 ~ 66589365 (-) True LOC110532712
XM_036988733.1 mRNA upstream 370090 66597200 ~ 66619536 (-) True LOC110531241
XM_036988743.1 mRNA upstream 400810 66627920 ~ 66751115 (-) False l1cama
TU946674 other downstream 76600 66127916 ~ 66147685 (-) True LOC110532692
TU946673 other downstream 76680 66127916 ~ 66147605 (-) False LOC110532692
TU946657 other downstream 188105 66035872 ~ 66036180 (-) True G832503
TU946633 other downstream 222551 66001219 ~ 66001734 (-) True G832480
TU946612 other downstream 277692 65946182 ~ 65946593 (-) True G832461
TU946916 other upstream 7881 66234991 ~ 66238174 (-) False LOC110531240
TU946914 other upstream 20993 66248103 ~ 66430769 (-) True LOC110531240
TU947239 other upstream 281608 66508718 ~ 66511566 (-) False G832991
TU947288 other upstream 360302 66587412 ~ 66588680 (-) False G833029
TU947289 other upstream 360302 66587412 ~ 66588341 (-) False G833029

Expression Profile