RNA id: TU946912


Basic Information

Item Value
RNA id TU946912
length 530
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G832725
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 66227600 ~ 66228183 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTCTATAGGGATCACAGCTAACCTCTATAGGGATCACATCTAACCTCTATAGGGATCACATCTAACCTCTATAGGGATCACATCTAACCTCTAGGGATCACAGCTAACCTCTATAGGGATCACATCTAACCTCTATACGGATCACATCTAACCTCTATAGGGATCACATCTAACCTCTATAGGGATCACAGCTAACCCTCAGcacagggtagaggaggatgtgTCAACCTCTATAGGGATTACAGCTAACCCTCAGcacagggtagaggaggatgtgTCAACCTCTATAGGGATTACAGCTAACCCTCAGTACAGGGTAGAAGAGAGAATAAACAGAGGAGGAGATgcagcagaggtagagagagagaaaacactgaAGTGACAACCACCCAGTAGTTCCAGCATAGCAAGGTCACACATACTGTTTTTAGGGCGGAAAAACCCTGCCCAGCACCTCGTTTATTTTGGATTCCCTCCTTCCTGTTTTAAAACAGAAAGCCATGCAATGCATATTATTTTACCATGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU946908 lncRNA downstream 490 66224285 ~ 66227110 (-) True G832724
TU946752 lncRNA downstream 36206 66190958 ~ 66191394 (-) True G832580
TU946742 lncRNA downstream 55723 66171667 ~ 66171877 (-) True G832570
TU946737 lncRNA downstream 64661 66162596 ~ 66162939 (-) True G832565
TU946734 lncRNA downstream 66998 66160381 ~ 66160602 (-) True G832562
TU946915 lncRNA upstream 47437 66275620 ~ 66277008 (-) True G832727
TU946975 lncRNA upstream 125042 66353225 ~ 66354690 (-) True G832780
TU946988 lncRNA upstream 145251 66373434 ~ 66379277 (-) True G832792
TU946994 lncRNA upstream 157909 66386092 ~ 66395574 (-) True G832798
TU947013 lncRNA upstream 203473 66431656 ~ 66431871 (-) True G832813
XM_021616785.2 mRNA downstream 79983 66127916 ~ 66147617 (-) False LOC110532692
XM_021616786.2 mRNA downstream 79983 66127916 ~ 66147617 (-) False LOC110532692
XM_021616787.2 mRNA downstream 123549 66081763 ~ 66104051 (-) False LOC110532694
XM_021616788.2 mRNA downstream 123865 66082295 ~ 66103735 (-) True LOC110532694
XM_021616789.2 mRNA downstream 179870 66044662 ~ 66047730 (-) False LOC110532695
XM_036988730.1 mRNA upstream 274 66228457 ~ 66430917 (-) False LOC110531240
XM_036988732.1 mRNA upstream 294479 66522662 ~ 66543277 (-) True LOC118966098
XR_002474877.2 mRNA upstream 358426 66586609 ~ 66589365 (-) True LOC110532712
XM_036988733.1 mRNA upstream 369017 66597200 ~ 66619536 (-) True LOC110531241
XM_036988743.1 mRNA upstream 399737 66627920 ~ 66751115 (-) False l1cama
TU946674 other downstream 79915 66127916 ~ 66147685 (-) True LOC110532692
TU946673 other downstream 79995 66127916 ~ 66147605 (-) False LOC110532692
TU946657 other downstream 191420 66035872 ~ 66036180 (-) True G832503
TU946633 other downstream 225866 66001219 ~ 66001734 (-) True G832480
TU946612 other downstream 281007 65946182 ~ 65946593 (-) True G832461
TU946916 other upstream 6808 66234991 ~ 66238174 (-) False LOC110531240
TU946914 other upstream 19920 66248103 ~ 66430769 (-) True LOC110531240
TU947239 other upstream 280535 66508718 ~ 66511566 (-) False G832991
TU947288 other upstream 359229 66587412 ~ 66588680 (-) False G833029
TU947289 other upstream 359229 66587412 ~ 66588341 (-) False G833029

Expression Profile