RNA id: TU947146



Basic Information


Item Value
RNA id TU947146
length 732
lncRNA type antisense_over
GC content 0.53
exon number 3
gene id G832907
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 66675600 ~ 66751166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAGGGTTCCCTGATGCTTCGCAGGTCAGGAGGATGTCTTCAGCACCGAACACAGTGATGGACTCAGGCTGGGTGGTGATCACTGGGGGTTTCTTAAAGTTAGAAGGTATGTGTATGGCTCCTTGGCTGAGCTGGGGGGcgtgggataggaggagagagaagagagggaggaggaggatagggtggaggaggagatgggggcgTCGCCCCCTACTGCCAACCTGATGTTGCTGAGTGTGAGGCATTGCTCACTGTCCCATCAAAGTCCCACCTGCTCAACACACACGTGAAACGCACACAGAGGGCAATCTGCACACACTCCTGCCGAGCGAGcgtgtgactctctctctgtctctgttgtcaCGCCCGATGTTCAGCCAGAGTTTCTCTTCCTTTTCTTCTACCTTTTTCTCCTGGTTTCCTTTggctctcagcctctctctcttttttctctctttttcgctCAGGTCCACACCCTCCTGCAGTCTTCCCTCCACAGGTTTAAAAGATGGCCTCAGGGATGTTGATTCTCCTTTTCCTCTGTCCTCCTTGTTTtcttcccctcgctctctctctcttcccctctctctatcaaaTTGAttgtgccctctcctctctctctgtgctgatGCTGCAGTGATACAAaaacacaccctctctccctctctctctctgcctccctcgctCTCATTGGCTTCCTGCTAGAGGTGACATCGCCTTTCTTCTGCTCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU947182 lncRNA upstream 9793 66660596 ~ 66665807 (+) True G832939
TU947180 lncRNA upstream 15344 66658524 ~ 66660256 (+) True G832938
TU947169 lncRNA upstream 34752 66640294 ~ 66640848 (+) True G832930
TU947143 lncRNA upstream 46947 66615300 ~ 66628653 (+) False LOC118966099
TU947380 lncRNA downstream 6782 66757948 ~ 66758462 (+) True G833097
TU947382 lncRNA downstream 7487 66758653 ~ 66758908 (+) True G833099
TU947425 lncRNA downstream 42100 66793266 ~ 66793585 (+) True G833142
TU947532 lncRNA downstream 169836 66921002 ~ 66921794 (+) True G833230
TU947541 lncRNA downstream 175412 66926578 ~ 66927097 (+) True G833239
XR_005053327.1 mRNA upstream 49775 66619565 ~ 66625825 (+) False LOC118966099
XM_021616809.2 mRNA upstream 82015 66582815 ~ 66593585 (+) False LOC110532711
XM_036988771.1 mRNA downstream 276863 67028029 ~ 67042075 (+) False LOC110532716
XM_036988770.1 mRNA downstream 276881 67028047 ~ 67042094 (+) True LOC110532716
XM_021616823.2 mRNA downstream 294031 67045197 ~ 67049885 (+) True LOC110532719
XM_036988778.1 mRNA downstream 512398 67263564 ~ 67278303 (+) True LOC110532722
XM_036988785.1 mRNA downstream 729186 67480352 ~ 67517997 (+) False LOC110532726
TU946270 other upstream 874769 65798377 ~ 65800831 (+) True LOC110532701
TU946236 other upstream 1004117 65669429 ~ 65671483 (+) True LOC110532705
TU945927 other upstream 1052284 65622938 ~ 65623316 (+) True G831865
TU945861 other upstream 1160615 65514393 ~ 65514985 (+) True G831810
TU945674 other upstream 1307468 65366291 ~ 65368132 (+) False LOC110531237
TU947383 other downstream 8112 66759278 ~ 66759673 (+) True G833100
TU947422 other downstream 63298 66814464 ~ 66821639 (+) True G833139
TU947546 other downstream 180522 66931688 ~ 66934487 (+) False G833241
TU947547 other downstream 180522 66931688 ~ 66934487 (+) False G833241
TU947549 other downstream 180522 66931688 ~ 66934487 (+) False G833241

Expression Profile