RNA id: TU950506


Basic Information

Item Value
RNA id TU950506
length 2477
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G835654
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 69085949 ~ 69089002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTATGGACATTTTATTAACATCAcacatcactccagtatttacACACAGTGTTTCTGTACAACATTAGTGCTAATTGTCTTTATTCCACTAATGAAGAACTATGACTCGAATCATCACCTTCTCATATTTCAAACATCCAGCGTGAAAAAGGATACATTTATTATTCCATACCTTAACATTAAGTGAATTATAGCCATTACATTTGAACAATTCCGTTTTGATATTTCATATAACATGTAGTAATCATCATTATTTATGCAACCaactgactttttttttttacaattatatTGTTTGCAAACAATGAAGTAAAACAAGTGTCAAATATTGCATCATATTCTTACTCTTTTAATCAATGGCATCAACATATTGCTGTACTAATGAACCCAATGACCGACCAATCAACATTCTTGCAAAACTAATGAACAGAAATGTGCTAAAGTAACACATATTTTGGTCCATCTTTCAATCAAAAACTGTATAAATGTAGTATATCTTCCTCTGTGTCAAAATGATGGATGTTTAGTATCACCTTTGAACGAATCCAGTGCATTTttgttaaaaacatttatttttatcattAATAAGTCGAAGGATTCAACTAATGAAAACTGAAACAAAAAAAATGGATCAAACAGATCAATCCCACTTTTCAAGCCTGTTGAAGATGTTTGGTGGTGGTTTGGTAAACACCATCCTCTGGCTCTACCAGGGGAATGCTTCAGGTAGTCTCCCACAGCTCTGCCTGCGtatgtcatgttctgtggccTTGCTGTTCCATTTCTTGACTGCCAGTGCAACATAGAAATAAACATATTTAGTCATGTTATGTATATACAACAGTCAATGTAATATATATGTAGCATCTTACATATCTATTAATTTGAAGGCACTTGGATGACTCCTGTCATCCGATCACTCCAAGCTGCATTAAGTCTGGATTCACGAAAGTCACATTGTGCTCGCATTAGGTTCAGATCTGCCAGGATGGGCATTGTATTAAGAATCTGACATAGTCTGGATGCAATCAGAGCAAGCGTTTGGCTCTCACACACAGTTGCCTTTTCTCGGTGTCTGTTGGTTGTATTAATATGTATAAGCTACGTAAAGAGACGGGGTGAATGAGTGGGGAAATGTACACGCTACACAAATTACTTTCAGAATAACAAAGAACAAATGTGGGTTCCTGAGAGGAAATCAACTGTCAAAAGGGGAGAGAAACTACATGAATCAGTGGACAATTTTTCACTAATGTAAATTAacatttaacactttttgggttactacatgattccatatgtgttatttcatagttttgatgtcttcacgattattctacaatgtagaaaataagtacagataaagaaaaacccttgaatgagtaggggtgtccaaacttttgactggtactgtagatgatGGAACATACATGCTTTTGCTTACGTGATATAAATATTTACCATCTAAACcatgtgacctctcacctctctggctGTAGAAGTGTCTCACTGTGCTCCACCCTCGCTgggtcctcagaggagaggaaggCCTCCAGACAGTCTCAGGGGTAACGAGGCGGCTTGCCTCATTCCTGGTCAGCTGACATGGCAGGGGGTGAGCGAATCATCACTGGTTCATACACACACAGGACAAGGACAATAAGCCTAGTTAATACAACACTACTACAGAGAGAAATAGCAATGGTGTCTTCTTGTAGGCACTAATTCCACCATGGTtcgttggacaaagcctatggggaaatgAACAGCGTTTTGGTGGGGTTTTGGATGAGTGtagaaaataaggtctgtggtaaacacaggcttaggagttTTGTCTATGAGATAATCATCAGCTAACGTCACATTTTGTGAATTTCTAAGCATTTATGTAATCATAAAAAGCACACAAACGCTTCATAATTCATGAAGGTCATGTTAACCCTCTgatatctcatagaacaaaacgtataagattTCCTAAGCCTGttttaacctcagaccttattttacACGTTTATCCTAAAACCCTATTCCTTCCCCATAGGAATGTCTGAACAAACCAGAGGTAACTTAGTTCAGTTTTTTAGGACTACAATCTGGTGAGCTCTCTAACATTCCATCTTACCTGCCCGTGTGTAACAAGAGGTGCCAGCTCTGAGTCTGGGTTTGATTATGATAATGCTATCTCTTACCTATCCATCTCTGAGTCTGTGTTTGATTATGATAATGCTATCTCTTACTTATCCATCTCTGAGTCTGGGTTTGATTATGATACTGCCATCTCTTACCTATCCATCTCTTCTGTGTTTGCTCCTGATTTCTGGACCACTGAAGCAGACTGGGATGTTACTGCCTGGGATGTTAGTCTGCCCTTTTGACCTCTTGAGGAGGATCCATTGTCATCAAGCGGCTTTGTTTCTTCATCAGACAGTGGAGTCATAAGTGAGAGCAGCTCCTTGGTCTGCCATTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU950502 lncRNA downstream 3656 69082431 ~ 69082749 (-) True G835652
TU950432 lncRNA downstream 31415 69038914 ~ 69054990 (-) False G835608
TU950437 lncRNA upstream 108775 69197777 ~ 69220305 (-) False G835609
TU950436 lncRNA upstream 108907 69197909 ~ 69268231 (-) False G835609
TU950445 lncRNA upstream 110075 69199077 ~ 69221742 (-) False G835610
TU950446 lncRNA upstream 110922 69199924 ~ 69269438 (-) False G835610
TU950447 lncRNA upstream 110922 69199924 ~ 69221742 (-) True G835610
XR_005053339.1 mRNA downstream 30240 69054523 ~ 69056165 (-) True LOC118966106
XM_036988836.1 mRNA downstream 36574 69024340 ~ 69049831 (-) True LOC110532760
XR_005053342.1 mRNA downstream 42871 69038907 ~ 69043534 (-) True LOC110532759
XR_005053341.1 mRNA downstream 43066 69038907 ~ 69043339 (-) False LOC110532759
XM_021616887.2 mRNA downstream 51559 69024339 ~ 69034846 (-) False LOC110532760
XR_005053343.1 mRNA upstream 17196 69106198 ~ 69107392 (-) False LOC118966107
XR_005053344.1 mRNA upstream 17196 69106198 ~ 69107392 (-) True LOC118966107
XM_036988856.1 mRNA upstream 264993 69353995 ~ 69356367 (-) True LOC110532775
XM_036988863.1 mRNA upstream 984542 70073544 ~ 70093532 (-) True LOC110532794
XR_005053348.1 mRNA upstream 993679 70082681 ~ 70084480 (-) False LOC118966109
TU950420 other downstream 28111 69025045 ~ 69058294 (-) False G835608
TU950434 other downstream 29725 68979883 ~ 69056680 (-) False G835608
TU950433 other downstream 37539 69025045 ~ 69048866 (-) False G835608
TU950419 other downstream 60548 69025045 ~ 69025857 (-) False G835608
TU949318 other downstream 710248 68375658 ~ 68376157 (-) True G834676
TU950674 other upstream 342565 69431567 ~ 69431900 (-) True G835808
TU951555 other upstream 993804 70082806 ~ 70084697 (-) False LOC118966109
TU951556 other upstream 993804 70082806 ~ 70084697 (-) False LOC118966109
TU951557 other upstream 993804 70082806 ~ 70084697 (-) False LOC118966109
TU951558 other upstream 994399 70083401 ~ 70084010 (-) True LOC118966109

Expression Profile