RNA id: TU950437


Basic Information

Item Value
RNA id TU950437
length 1178
lncRNA type read_through
GC content 0.43
exon number 2
gene id G835609
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 69197777 ~ 69268302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttGAAGGATGTGCGTATGACCACAAACATTTCTATAACAATCATGCAAGGCATTAATAGTAAGGCATACATAATGAAGGATTCATAAAGAGTTTATGTCATGTCTTCTAGCATAAGAGGCTGAGATTGAAGATCATCCAGGCGGTGTTCTCTTCTCCTGGAGCCAAACACCCCCAGACTGCCCCCTGAAGGACAGCTTGTTACATGTTTTTGAATGTTGAGCTTTAACCAAGCATGTACTTTGAGGGATTTGGGGCCATTTTGATGTGGACATGCATGTCATCCGCAAAACTGTGTAAGAGCATGTCATCTGACTACATGGCCAAGTGGAAGTAGGCAGAGGATGAACCGGGTGGGGGACACCACAGGGGACAGAGTGGACCTGCACTCTTCTACAATACTTATTCTGAATTTTAATGTGAGATGGCGTGGAAGCCGTTCAGGATAGTTCCTGAAATATTGTCTTTTCACCCTTCTGTGATCCATACAGTCTATAGTAAAGTTGTATCTGTTTGTTGATGTCCTCGTCTACTTCTATGAGCGTGATCTTGATTTTCTTGTAGTGTAAAGTTATCCATTTAACCATGTTTGATGTTCTTTAATTTCTGGGGAACCTTCCCCAAGTGAACGCTGCATCCTGCACCAGTATCCAGTAATATGTGTCTCAAGATATTATCAAGTCCCATTTGGAGTTCCATAGTCTGGGCTGACATAGATGTTGTGGTCCTGAAGTTATACACATTTGAATTTCCCCTGGGCAGAGCTGAGGGTTCTCAGCTACTGAATCTGTTACCTAGCAAGGTGAAGCTAATTTATACTCATCACATGCTCCTTTCCATTTTAGAACAGGCTGTAGGCAGAAGCTGATGTGTGACCACCCTTCCGAAGCATCTTACCAGTGGTGCCCACATGAAAAGCTAGCTATTCAGTGACCCAAGTGGGGACAGTTCAGGCTGATGAACTGAACATCCCCATGTGATCCCCATGTGATACAAAGACACAGTGGTCCTCTCCCAACAAGTGTCTAGAAGTAATTCTAATTACTGGAGGTTGTGTTTAATTTCTTTACACTACAATTGAATGTGCTGTAGAATCCTGTTTTTAAATCAACCAGATTTAACATGTAGTGTTAAGATACACTATAGATGGCTGGGCCAGCCAGCCAGTGGAACACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU950508 lncRNA downstream 108775 69085949 ~ 69089002 (-) False G835654
TU950506 lncRNA downstream 108775 69086405 ~ 69089002 (-) True G835654
TU950502 lncRNA downstream 115028 69082431 ~ 69082749 (-) True G835652
TU950432 lncRNA downstream 142787 69038914 ~ 69054990 (-) False G835608
TU950440 lncRNA upstream 25011 69245316 ~ 69245796 (-) False G835609
TU950441 lncRNA upstream 25011 69245316 ~ 69268231 (-) False G835609
TU950442 lncRNA upstream 25011 69245316 ~ 69246130 (-) True G835609
TU950601 lncRNA upstream 58383 69278688 ~ 69278925 (-) True G835739
TU950602 lncRNA upstream 59160 69279465 ~ 69279755 (-) True G835740
XR_005053343.1 mRNA downstream 90385 69106198 ~ 69107392 (-) False LOC118966107
XR_005053344.1 mRNA downstream 90385 69106198 ~ 69107392 (-) True LOC118966107
XR_005053339.1 mRNA downstream 141612 69054523 ~ 69056165 (-) True LOC118966106
XM_036988836.1 mRNA downstream 147946 69024340 ~ 69049831 (-) True LOC110532760
XR_005053342.1 mRNA downstream 154243 69038907 ~ 69043534 (-) True LOC110532759
XM_036988856.1 mRNA upstream 133690 69353995 ~ 69356367 (-) True LOC110532775
XM_036988863.1 mRNA upstream 853239 70073544 ~ 70093532 (-) True LOC110532794
XR_005053348.1 mRNA upstream 862376 70082681 ~ 70084480 (-) False LOC118966109
XM_036988866.1 mRNA upstream 862376 70082681 ~ 70084496 (-) False LOC118966109
XM_036988864.1 mRNA upstream 862376 70082681 ~ 70084497 (-) False LOC118966109
TU950420 other downstream 139483 69025045 ~ 69058294 (-) False G835608
TU950434 other downstream 141097 68979883 ~ 69056680 (-) False G835608
TU950433 other downstream 148911 69025045 ~ 69048866 (-) False G835608
TU950419 other downstream 171920 69025045 ~ 69025857 (-) False G835608
TU949318 other downstream 821620 68375658 ~ 68376157 (-) True G834676
TU950674 other upstream 211262 69431567 ~ 69431900 (-) True G835808
TU951555 other upstream 862501 70082806 ~ 70084697 (-) False LOC118966109
TU951556 other upstream 862501 70082806 ~ 70084697 (-) False LOC118966109
TU951557 other upstream 862501 70082806 ~ 70084697 (-) False LOC118966109
TU951558 other upstream 863096 70083401 ~ 70084010 (-) True LOC118966109

Expression Profile