RNA id: TU950445


Basic Information

Item Value
RNA id TU950445
length 1333
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G835610
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 69199077 ~ 69269438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCTTAATTAATACCACTTTTAATGACAACAGTTCAATCCTTTTTTATCTAGACTTTATTAGGCCagcacctacagtaccagtccaaagttgggacacacctactcattcatgggtttttctttatatttactattttctccattggatgtcttcactattattgtacaaacTATgaaatcacgtagtaaccaaaaaaagtgttaaacaaatccaaatatagtttatatttgagattcttcaaagtaggcaccctttgccttggatgacagctttgcacactcttggcattatctcaaccagcttcctgaggtagtcacctggagtgtgccttgttaatttgtggaatttatttccttcttaatgcgtttgagccaatcagttacgttgtgacaaggtaggggtggtatacagaagatagccctatttagtaaagaACAGCaaggtaagaacagctcaaataagaaaagagaaacaacagtccatacGGAAaagtttgaaagtttcttctagtgcaGTCGAGAAAACCATttagcgctatgatgaaactagctctcatgaggaccgacacaggaaaggaagacccagagttacctctgctgcagaggataagtgcattagagttaccagcctcagaaattgcaggccaaataaatgtttaacagacacatcttcatatcaactgttcagaggagactacgtgaatgaGGCCTTCATCGTCAAATtactgcaaaaaaaaacactaataaaggacaccaataagaagagacttctttgggccaagaaacacgagcaatggacattagaccggtggaaatcagtCTTTTGGTCGGATGAGACCAAATCTAAAATGTTTtgttccaacctccgtgtctttgtgagacacggagtaggtgagcggatgatctctgcatgtgtggttcccacatgTGTGGTTTATTTAGATtaaaggtacacttaaccagtatggctaccacagcaatacacttagtgggactatcatttgtttttctacaggacaatgacccaacacacctccaggctgtgtaagggctattcgaccaaggagagtgatgaagtgctgcatcagatgacctggcctccacaatcacctgacctgaacccaattgagttggtttgagatgagttggaccgcagagtgaaggaaatgcagccaacaagactgttggaaacgcattccaggtgaagctggtttagagaatgccaagagtttacaaagttgccatcaaggcaaagggtcgctactttgaagaatctaaaatacagtTACATTTGGTtaacacatgattccatatgtgtcatttcatagttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU950508 lncRNA downstream 110075 69085949 ~ 69089002 (-) False G835654
TU950506 lncRNA downstream 110075 69086405 ~ 69089002 (-) True G835654
TU950502 lncRNA downstream 116328 69082431 ~ 69082749 (-) True G835652
TU950424 lncRNA downstream 144087 69039394 ~ 69054990 (-) False G835608
TU950440 lncRNA upstream 23574 69245316 ~ 69245796 (-) False G835609
TU950441 lncRNA upstream 23574 69245316 ~ 69268231 (-) False G835609
TU950442 lncRNA upstream 23574 69245316 ~ 69246130 (-) True G835609
TU950601 lncRNA upstream 56946 69278688 ~ 69278925 (-) True G835739
TU950602 lncRNA upstream 57723 69279465 ~ 69279755 (-) True G835740
XR_005053343.1 mRNA downstream 91685 69106198 ~ 69107392 (-) False LOC118966107
XR_005053344.1 mRNA downstream 91685 69106198 ~ 69107392 (-) True LOC118966107
XR_005053339.1 mRNA downstream 142912 69054523 ~ 69056165 (-) True LOC118966106
XR_005053342.1 mRNA downstream 155543 69038907 ~ 69043534 (-) True LOC110532759
XR_005053341.1 mRNA downstream 155738 69038907 ~ 69043339 (-) False LOC110532759
XM_036988856.1 mRNA upstream 132253 69353995 ~ 69356367 (-) True LOC110532775
XM_036988863.1 mRNA upstream 851802 70073544 ~ 70093532 (-) True LOC110532794
XR_005053348.1 mRNA upstream 860939 70082681 ~ 70084480 (-) False LOC118966109
XM_036988866.1 mRNA upstream 860939 70082681 ~ 70084496 (-) False LOC118966109
XM_036988864.1 mRNA upstream 860939 70082681 ~ 70084497 (-) False LOC118966109
TU950420 other downstream 140783 69025045 ~ 69058294 (-) False G835608
TU950434 other downstream 142397 68979883 ~ 69056680 (-) False G835608
TU950433 other downstream 150211 69025045 ~ 69048866 (-) False G835608
TU950419 other downstream 173220 69025045 ~ 69025857 (-) False G835608
TU949318 other downstream 822920 68375658 ~ 68376157 (-) True G834676
TU950674 other upstream 209825 69431567 ~ 69431900 (-) True G835808
TU951555 other upstream 861064 70082806 ~ 70084697 (-) False LOC118966109
TU951556 other upstream 861064 70082806 ~ 70084697 (-) False LOC118966109
TU951557 other upstream 861064 70082806 ~ 70084697 (-) False LOC118966109
TU951558 other upstream 861659 70083401 ~ 70084010 (-) True LOC118966109

Expression Profile