RNA id: TU953585


Basic Information

Item Value
RNA id TU953585
length 602
RNA type TUCP
GC content 0.54
exon number 2
gene id G838204
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 72118661 ~ 72119287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGGGTTGGGGCTAAGGAACCCGGGACTGGTGGGTTTGGGGGGTGGGCTAGGGATGAGGAACAGAGGCTCAGGTGGCGGGGGTACTGTCTATCAGGGCAGGTAGAGCTGGACAGGTGGAGGTCTGGCAAAATCCCACTATCATTCTAGAGATGAAGTCTGGTCGTGCACCTGGTAACCAGACTAGATGGTGGAAGTCTGGACTGTGGATGATATAGGCCTCTGGAGTGGTAGGAGAAGGGATGGAATGGGTCTCTGGAGTGGTAGGAGAAGGGATGGAATGGACCTCTGGAGTGGTAGGAGAAGGGATGGAATGGGTCTCTGGAGTGGTAGGAGAAGGGATGGGATGGACCTCTGGAGTGGTAGGAGACGGGATGGGATGGACCTCTGTAGTGGTAGGAGAAGGGATGGAATGGACCTCTGGAGTGGTAGGAGAAGGGATGGAATGGGTCTCTGGAGTGGTAGGAGAAGGGATGGGATGGACCTCTGGAGTGGTAGGAGAAGGCCTCACTCGATGACGATCCAGGTGAAGGTACAACACTTTATCTTTCTCCTCCCACAGAATGATGCATTCTTAATGATGTTGAGAGGTTTCTGGTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU953553 lncRNA downstream 11229 72107120 ~ 72107432 (-) True G838189
TU953524 lncRNA downstream 58634 72059772 ~ 72060027 (-) True G838160
TU953522 lncRNA downstream 65537 72052917 ~ 72053124 (-) True G838158
TU953517 lncRNA downstream 67687 72050406 ~ 72050974 (-) False G838155
TU953518 lncRNA downstream 67687 72050406 ~ 72050974 (-) True G838155
TU953594 lncRNA upstream 2963 72122250 ~ 72122918 (-) True G838208
TU953603 lncRNA upstream 6969 72126256 ~ 72126569 (-) True G838217
TU953604 lncRNA upstream 7800 72127087 ~ 72127290 (-) True G838218
TU954577 lncRNA upstream 20226 72139513 ~ 72140170 (-) True G838995
TU954579 lncRNA upstream 23647 72142934 ~ 72144634 (-) True G838996
XM_036988931.1 mRNA downstream 82848 71985134 ~ 72035813 (-) True LOC110531272
XM_036988926.1 mRNA downstream 138276 71960538 ~ 71980385 (-) False LOC110531271
XM_036988927.1 mRNA downstream 138276 71960538 ~ 71980385 (-) False LOC110531271
XM_036988928.1 mRNA downstream 138276 71960538 ~ 71980385 (-) False LOC110531271
XM_036988929.1 mRNA downstream 138276 71960538 ~ 71980385 (-) False LOC110531271
XM_036986973.1 mRNA upstream 87159 72206446 ~ 72222104 (-) True LOC110532812
XR_005053371.1 mRNA upstream 116841 72236128 ~ 72238619 (-) False LOC118966115
XR_005053368.1 mRNA upstream 116842 72236129 ~ 72238616 (-) False LOC118966115
XR_005053370.1 mRNA upstream 116843 72236130 ~ 72238619 (-) False LOC118966115
XR_005053369.1 mRNA upstream 117918 72237205 ~ 72238609 (-) True LOC118966115
TU953440 other downstream 182088 71934878 ~ 71936573 (-) True G838098
TU953256 other downstream 296324 71821597 ~ 71822337 (-) True G837952
TU951719 other downstream 1689703 70428466 ~ 70428958 (-) True LOC110531265
TU951615 other downstream 1909036 70208678 ~ 70209625 (-) True G836619
TU951557 other downstream 2033964 70082806 ~ 70084697 (-) False LOC118966109
TU955034 other upstream 907688 73026975 ~ 73028966 (-) False G839372
TU955035 other upstream 907779 73027066 ~ 73028966 (-) True G839372
TU955315 other upstream 1342068 73461355 ~ 73463040 (-) True G839553
TU955441 other upstream 1605965 73725252 ~ 73731630 (-) True rs21
TU956335 other upstream 2583030 74702317 ~ 74703252 (-) True G840404

Expression Profile