RNA id: TU956335


Basic Information

Item Value
RNA id TU956335
length 936
RNA type TUCP
GC content 0.44
exon number 1
gene id G840404
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 74702317 ~ 74703252 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTAGAAATGTGAAGTAGGATGAGTAGATCTGAAGGAAAACAATGTTTTCCCCAATTTGTGTGCTGGGTTGAGAGATATTTATTCTTATGACATCAATACCGACTcggagtatacagtatattcatagcaGATCAGTATGCATCACTGGTCTCCAACACAGTCAAGGTGTagcacacatctctctctctctctctctctcctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctgtctctctctctctctctctctctctctctgtctcgctctctctctgtctctctctctgtctctctctctgtctctctctgtctctctctctgtctctgtctctgtttctctctgtctctgtttctctctgtctctctctgtctctgtctctgtctctctgtctctctctttctttctcgctctctttccctttctctctctctttctctctttctctctctctctctctctctgtctctttctctctctgtctctctctgtctctctctttatttctctctctctctctctctctctctgtctctgtctctctgtctctctctctgtctcgctctctctctgtctgtctctctctctgtctgtctctctctctttctctctctctctttctctctctctttctctctctctctttctctctctttctctctctctgtctctgtctctgtttctctctgtctctgtttctctctgtctctctctctctctctctttctttctttctttctctctctctctttccctttctctctctctttctctctctctctgtctctttctctctctgtctctttctccctacctttTGTCTCACATACACTATCCCATGGTTTTCTCATTTTAGTAATTTTAATCAGACAATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU956326 lncRNA downstream 16650 74685424 ~ 74685667 (-) True G840395
TU956325 lncRNA downstream 17905 74684133 ~ 74684412 (-) True G840394
TU956324 lncRNA downstream 26243 74675832 ~ 74676074 (-) True G840393
TU956316 lncRNA downstream 36556 74665075 ~ 74665761 (-) True G840385
TU956317 lncRNA downstream 51840 74645582 ~ 74650477 (-) True G840386
TU956338 lncRNA upstream 2149 74705401 ~ 74710037 (-) True G840407
TU956344 lncRNA upstream 15219 74718471 ~ 74718766 (-) True G840413
TU956348 lncRNA upstream 19533 74722785 ~ 74723081 (-) True G840417
TU956350 lncRNA upstream 30143 74733395 ~ 74733679 (-) True G840419
TU956353 lncRNA upstream 37901 74741153 ~ 74748536 (-) True G840422
XM_036989001.1 mRNA downstream 61808 74568341 ~ 74640509 (-) True LOC110516643
XM_036989037.1 mRNA downstream 199329 74377072 ~ 74502988 (-) False LOC118966122
XM_036989038.1 mRNA downstream 199329 74377072 ~ 74502988 (-) False LOC118966122
XM_036989039.1 mRNA downstream 199357 74377072 ~ 74502960 (-) False LOC118966122
XM_036986978.1 mRNA downstream 334302 74367384 ~ 74368015 (-) True LOC118965945
XM_021581586.2 mRNA upstream 86737 74789989 ~ 74792632 (-) True LOC110503218
XM_036989041.1 mRNA upstream 648012 75351264 ~ 75450987 (-) False LOC110531288
XM_036989042.1 mRNA upstream 650004 75353256 ~ 75450987 (-) False LOC110531288
XM_036989051.1 mRNA upstream 803955 75507207 ~ 75625131 (-) False LOC110531287
XM_036989043.1 mRNA upstream 806437 75509689 ~ 75625131 (-) False LOC110531287
TU955441 other downstream 970687 73725252 ~ 73731630 (-) True rs21
TU955315 other downstream 1239277 73461355 ~ 73463040 (-) True G839553
TU955034 other downstream 1673351 73026975 ~ 73028966 (-) False G839372
TU955035 other downstream 1673351 73027066 ~ 73028966 (-) True G839372
TU953585 other downstream 2583030 72118661 ~ 72119287 (-) True G838204
TU956722 other upstream 378319 75081571 ~ 75086417 (-) True G840763
TU956739 other upstream 404167 75107419 ~ 75108925 (-) True G840780
TU956783 other upstream 429199 75132451 ~ 75133738 (-) True G840818
TU956794 other upstream 481872 75185124 ~ 75186750 (-) True G840828
TU956811 other upstream 520972 75224224 ~ 75225127 (-) True G840841

Expression Profile