RNA id: TU958818


Basic Information

Item Value
RNA id TU958818
length 945
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G842310
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 76719286 ~ 76720282 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tGTGTATGTATAACGTTACTAGATCATAAATGAACGTTAAGCAGCCAATCTTCCATACACACATTGCTACCAGTCTGCGTGCGTGATACGTAGTCTACGAAATACAGTGATGACTGATaaacaaatgtttttaaaaaaacaaacagatggTCCAGAAGACAACCAAAGACAAGTAGTCGTGTTGATATCCCAGTTGCCCCGTCATGTTGATATCCCAGTTGCCCCGTCATGTTGATATCCCAGTTGCCCCGTCACGTTGATATCCCAGTTGCCCCGTGTTGAGAACTTTCATTTGTCTTAATGCCAACAGCATTAAGTGTCACATGCAGAAGTAAAAAACAGCACTGGTCTGCCTGATCTAATGGTAAACTACCAGTGATGTGTTGGAAGACATTTTTCAGTCATGTCCATAAGTAAAGTCAAAATTCTAGTCATAGAAATACAATGAATAGAATGATTTTCTAGCCATTCTATTTCTAAAAGCACCAAATTGAAATGTCAATGACACGCAGGCACTTCTGCGATGGTTGGAGGCGCACCAATTCACGTCCTGGTTTTCCAAAAACAAAGTCCTGTACGGTGAACCGAGCTGGTATGATGAGCAACCTGGCCTTGGGTCCCTGTATTTAGTTGGTTCCGTGAACTACACTTGCATAACAAGTAAACCTGCCTAGAGTTATGGCTTGGTGGGCTAACACAAGTTTAGGatttagctcagcaggctaacacagtcttgtccCGGGGGTTCAAACCCTCTCCAGTCACACCCTCCAACCCTGTTACACCCACCCATCCTCCCCCAACTCCAGCTCAAATTCCAGGTCCTCCTCCTCTATAAGTTCCAGGTCCTTCTCCACGATGTTGTCTCGACACctctcacacctctcctcctccagagGGACCAGCAGTTCACAGATGGCCGCCCTCACACAAAGAACCGGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU958819 lncRNA downstream 1269 76717254 ~ 76718017 (-) True G842311
TU958815 lncRNA downstream 3467 76715509 ~ 76715819 (-) True G842308
TU958813 lncRNA downstream 5341 76713733 ~ 76713945 (-) True G842306
TU958809 lncRNA downstream 9966 76708902 ~ 76709320 (-) True G842302
TU958810 lncRNA downstream 13541 76701400 ~ 76705745 (-) True G842303
TU958820 lncRNA upstream 172 76720454 ~ 76720690 (-) True G842312
TU958822 lncRNA upstream 12075 76732357 ~ 76732620 (-) True G842314
TU958825 lncRNA upstream 22748 76743030 ~ 76743276 (-) True G842317
TU958828 lncRNA upstream 23541 76743823 ~ 76746280 (-) False G842318
TU958836 lncRNA upstream 25319 76745601 ~ 76753605 (-) True G842319
XM_036989086.1 mRNA downstream 50151 76662784 ~ 76669135 (-) False zgc:113363
XM_036989103.1 mRNA upstream 490138 77210420 ~ 77227772 (-) False LOC110531297
XM_036989104.1 mRNA upstream 490138 77210420 ~ 77227773 (-) False LOC110531297
XM_036989105.1 mRNA upstream 490138 77210420 ~ 77227773 (-) True LOC110531297
XM_036989109.1 mRNA upstream 518548 77238830 ~ 77253700 (-) False lrrc23
XM_036989106.1 mRNA upstream 518548 77238830 ~ 77253707 (-) False lrrc23
TU958765 other downstream 56227 76658538 ~ 76663059 (-) False zgc:113363
TU958859 other upstream 136175 76856457 ~ 76859965 (-) True G842335
TU958999 other upstream 322307 77042589 ~ 77043395 (-) True G842449
TU959052 other upstream 608520 77328802 ~ 77355128 (-) True LOC110532861
TU959118 other upstream 644737 77365019 ~ 77365360 (-) True G842543
TU959575 other upstream 1043819 77764101 ~ 77764594 (-) False G842858

Expression Profile