RNA id: TCONS_00003721


Basic Information

Item Value
RNA id TCONS_00003721
length 3207
RNA type mRNA
GC content 0.45
exon number 9
gene id XLOC_001883
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6747720 ~ 6753115 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAATTCCTCAGAGTGACAAACGAACGAGTACAGTGAACAGTGATTATCGACTTTAGCGACTTGTTTTGCATCTCAAATGGCAAATAACACGTCAGCTGTGTTTTTTACTCGACTTAATTTGATAAAGCCTGTATTTGTCAACGATAATCATCAAAGTGACATGATGGCTTCTCCTACACCTCCTACAGTGATGAGAAGCCCAACAGaAAATCTAGAGAGAAGGAGGAAAGGGAATAAAGCCTCTGCTTTCTTTAAGAGAGCATGGAAGGCTGTGAAGCGCCCTTTCCTTTGCTGTGAACGGAACAGAGTGGCTCCATTTGAACCACAGTCAGATGTCGACGATTTTGAGCATCTGCCTGTTCCAGGTCCCTCCAGGACCGTCGCAGCACATGCAGACCTTGAGCCGGTGTGGCTGCCAGGCCAGGTCTGTGAAGACCCTCAGCCgttgagtgttccgggcccctCCAGGATCAAGCAAACAGCAGATCCGGCCCGTCCAGAGTCCTCAACGGCCCTGACAGGTCATGTTGACACTGAGCTGGTGTGTCTGCCAGGCCAGATCTGGGAAGATCCTCAGCCAATCATTGTCCATGGCCTCACCAATATTAAGAACATGACGGATGCAGATTCGGCCTGTCCTGAGTCGCCTCCGTCTGTTCAAGACCCCTCTGATATTGATGGGACTGATGaaaaacccaagaaaggaaggaaagggaAAAGAGTCTCTGCTTTCTTCAAGAGAGTATGGAAGGCTGCAACGTGCCCTTTCCTGTGCTGTGACACAGATGTAGTCCAGCATCTTACACCACAACCTGAACCTGAACCTGAGCCAGAGCCAGAGTCAGAGTCAGAGCCAGAGCTGGAGGAAGCTAACCCTGAGTCAGTATGTCTGCCAGGCCAGGTTCCTGAGGAGCCTAAAGAGGCTTCTGGACCCCCTCGTGGATTTGATTTGTCTGACTTTGAAGTAGGAGCCGTGATTGGAGAAGGAGCTTTTGGCCAGGTGTTTGTGGCATCTCACAAACTTCGGAAAAGTGAAAAGGTTGCCCTGAAGTTTATCAACAAGAAGGAAGACAACCATTATCTCGACATTGATGGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTCAAGTTGAAGAATGCTCCGCAATGCCCAAACATCATCGGATTACACGACTGGATTGAGAATGAGAACAACTTCATTCTCAGTCTGGAGTACGCAGAGTCATACCAGACCTTGGATCAGTACATCACAGATACATTGGACATTGGTGAAAACCGATCACGCCAGTTAATGAGTCAGTTGATCCAAGCTGTCAAGTTCTGCACTGAGCGTGGAGTTTTCCATGGAGATATCCACACGGAGAACATCATGGTGACTCAACCCCGATTACAGCTCAAATTGATCGACTTTGGTTGTGCTTGGCCAATTAGCAGCGAGCCTTTCAATAGCGATCAATATCGAGGAGTTATTTACTGCACGCCACCTGAGGTTTTCAGGGATCCCACATACCTTGCTGACCCGGTAAACGTCTGGACAATTGGCATCGTGCTGTATGAAATCTTGCATGCAGAATTGCCCTTTCGTGACGAAGATTCAGTAATGTTTGAATCCGCTGAGATACACCCCAGGTTATCTCCAGCATGCCAGGACCTGATTTCCCAGTGTTTCATCCGCTGTCCACTTGAGCGGCTGAAGTTACATCAGTTAGAAGAGCACCAGTGGTTCAATCTAACAACCCCAAATCTAATGGAGCTGTTAGACGCCAGGATaaaacaCTAAAGAAGCGAAGAGGAGAACAGCAGCATTTCCAgaatttcacaagactgttaaagttattaattactccctcatgtcattccaaacccctcaGATCTTACTTTTCAGTGTCAGTGTGTTGATGAGAGCTCTGTCCTGCACTGTGTGTGTTTCGCACTGCTGACGTTTACCTcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttatccgtcagcagtgcgacacacatCCAGTGCAGTACAGGACTTctgaagtcattatttttgttttaatattttagtttttctttcttcATTAAAGAAGTTTCACTTCAAACCCCTGACACCTTTCCtcatcttcagaaaacaaatgaaaagattTGAGATGAAATCAAATCATCAAACCATGAGAGCTCTGtcctgcactgtgtgtgtgttcactgctgACATTTACCTcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacgtcagcagtgcgacacacatacagtgcactgCGCTCTTCTGGACGTGCGGtttgagggtcagagagctctcagatttcatctcaaatgttttaatttgggTTCTCATTATGAACTAAACATGAATTTGAACTAAGGACATGAgctgagtaattaatgacaataatggtAATGAATGGTGCCtagaccgcagctctgcacaagacctttggccacaggagaaatggtcgtacccaaccgagcctggtttctctcgaggttttttccttcacttttgtcaattggtgaagttttgttcctcgccactgtcgccgctggcttgcttggttgggacttgtggagctgcgcatcgatggatttgctcttcagtgtttggactttcagcagtgacaattaaaccacactgaactgaactgaactgaacttcaactccaGTGCTGTCACAGTTTTCTCCTCTAAAGTGTCATCAAAGATCTGCTCGACTATTTTCTCCCTCATTAATGAATCTGGTGTTCTGTCATAAGAGAGACTGATTGTTTTATAATGAAGTGTTCATGATTGTTTTGTAATGAATTGTTCTTTGAATTGTTTTGTGATGAACTGCTTTTATGTATTGTTGGCtaataagtcaaataaaatcCTGTGAATCAAACTGAAGCTCTGATCATCATTTCTGTGAGTTTTCTAAATGACTCCTTACTCAATTAAAGAGAGAGTTCTCCCTCAACTATTTACTCACGTGCTTCCAAACCGATGaggttctttcctctgttgaacactgaagaagatacaaatctgaaaacctgtaaccattaatgtccacagtaggaaaacaaacacaatggaagtcaatagttacaggtttccagcatttttcaaaacatcttcttttgtgtataacAGAAGAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000148571

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005822 lncRNA upstream 62924 6684418 ~ 6684796 (+) True XLOC_001880
TCONS_00005821 lncRNA upstream 102945 6644397 ~ 6644775 (+) True XLOC_001878
TCONS_00005820 lncRNA upstream 118723 6628619 ~ 6628997 (+) True XLOC_001877
TCONS_00003709 lncRNA upstream 397444 6340468 ~ 6350276 (+) False XLOC_001873
TCONS_00005819 lncRNA upstream 630784 6116294 ~ 6116936 (+) True XLOC_001871
TCONS_00005823 lncRNA downstream 1155 6754270 ~ 6755766 (+) True XLOC_001884
TCONS_00003730 lncRNA downstream 330624 7083739 ~ 7102754 (+) False XLOC_001887
TCONS_00005678 lncRNA downstream 1055596 7808711 ~ 7809243 (+) True XLOC_001897
TCONS_00005824 lncRNA downstream 1090291 7843406 ~ 7849873 (+) True XLOC_001898
TCONS_00005825 lncRNA downstream 1117494 7870609 ~ 7901888 (+) True XLOC_001899
TCONS_00003720 mRNA upstream 12923 6729670 ~ 6734797 (+) True XLOC_001882
TCONS_00003719 mRNA upstream 44908 6697369 ~ 6702812 (+) True XLOC_001881
TCONS_00003718 mRNA upstream 60745 6681523 ~ 6686975 (+) False XLOC_001880
TCONS_00003717 mRNA upstream 77437 6664911 ~ 6670283 (+) True XLOC_001879
TCONS_00003716 mRNA upstream 101036 6641514 ~ 6646684 (+) False XLOC_001878
TCONS_00003722 mRNA downstream 131008 6884123 ~ 6905256 (+) False XLOC_001885
TCONS_00003723 mRNA downstream 131022 6884137 ~ 6905574 (+) False XLOC_001885
TCONS_00003724 mRNA downstream 131037 6884152 ~ 6905574 (+) False XLOC_001885
TCONS_00003727 mRNA downstream 131512 6884627 ~ 6904934 (+) False XLOC_001885
TCONS_00003726 mRNA downstream 131512 6884627 ~ 6904934 (+) False XLOC_001885
TCONS_00003693 other upstream 978108 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 1595319 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 1600138 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 1760237 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 2254362 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003731 other downstream 330656 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 820201 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 1590073 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 2109406 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 2116353 8869468 ~ 8880126 (+) False XLOC_001922

Expression Profile

//