RNA id: TCONS_00005823


Basic Information

Item Value
RNA id TCONS_00005823
length 898
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_001884
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6754270 ~ 6755766 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAACACAAACAACAGttcaacaaaaacacaacaggggtaaaagaacattttaagcaTGAAATAATGCTCAGAATTAAAGAAAACATATCAACAACATGTGCATTCAAGTATTCTAAGACATGCCTTCTAAACAAATGATGTACTTTCTTATTGAAGGCACTGCAGCCAGTAGTGGTTTTCAATGCAGTTATTTATTAAGAGGTTAAAACCTACATGTGTTAAAATTAAATACGCTGTATCGCTCGaagcattaaattaaaaacaatgattacatttttgATAACTATTGATTGAAATCGAATATGTaggtaaaacaaaaaaacgtGGGAAACACTCTTAAAATATCACCAACACATCACGATTAATAAATATATGCTGAATGAATCTAAGGTGCTGTTTAGAGCATATTCCACCAACGGAACAATAAAACAAGGGGATCATCTTTAAATAGGTCGGCATCAAACAacctaaacaataaaaataaactagtCAGAAAGGGAGAAATCGAACAATTCAGTGCAGAGtgcattaaaagtaaattaaaggaaatgtatgtttacatgacaacaatATACTGAAGCGGAAAGATTTTCCTTTGTGTTTCAGAACATGTGCTGTAGtttgcatgccaggccagtagttggcgatgtcactttgtaaagagacactatctgcttgttaagttgtgacgtatGAAATGCTGTTTCCGGGTCCATACTCATTTGAActgagaaaatattcgtttatgaccacttttttttCATGTCATGGCCCACACGGAATTTGTGGGCGCAAAATTCGGCAGATTTTTAGCTTATCGTTGATTCTGTATATTTACTTgtgaacatttatatttattcagtttttaaattaatttgaatataattattgactaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005822 lncRNA upstream 69474 6684418 ~ 6684796 (+) True XLOC_001880
TCONS_00005821 lncRNA upstream 109495 6644397 ~ 6644775 (+) True XLOC_001878
TCONS_00005820 lncRNA upstream 125273 6628619 ~ 6628997 (+) True XLOC_001877
TCONS_00003709 lncRNA upstream 403994 6340468 ~ 6350276 (+) False XLOC_001873
TCONS_00005819 lncRNA upstream 637334 6116294 ~ 6116936 (+) True XLOC_001871
TCONS_00003730 lncRNA downstream 327973 7083739 ~ 7102754 (+) False XLOC_001887
TCONS_00005678 lncRNA downstream 1052945 7808711 ~ 7809243 (+) True XLOC_001897
TCONS_00005824 lncRNA downstream 1087640 7843406 ~ 7849873 (+) True XLOC_001898
TCONS_00005825 lncRNA downstream 1114843 7870609 ~ 7901888 (+) True XLOC_001899
TCONS_00005826 lncRNA downstream 1222751 7978517 ~ 7984582 (+) True XLOC_001900
TCONS_00003721 mRNA upstream 1155 6747720 ~ 6753115 (+) True XLOC_001883
TCONS_00003720 mRNA upstream 19473 6729670 ~ 6734797 (+) True XLOC_001882
TCONS_00003719 mRNA upstream 51458 6697369 ~ 6702812 (+) True XLOC_001881
TCONS_00003718 mRNA upstream 67295 6681523 ~ 6686975 (+) False XLOC_001880
TCONS_00003717 mRNA upstream 83987 6664911 ~ 6670283 (+) True XLOC_001879
TCONS_00003722 mRNA downstream 128357 6884123 ~ 6905256 (+) False XLOC_001885
TCONS_00003723 mRNA downstream 128371 6884137 ~ 6905574 (+) False XLOC_001885
TCONS_00003724 mRNA downstream 128386 6884152 ~ 6905574 (+) False XLOC_001885
TCONS_00003727 mRNA downstream 128861 6884627 ~ 6904934 (+) False XLOC_001885
TCONS_00003726 mRNA downstream 128861 6884627 ~ 6904934 (+) False XLOC_001885
TCONS_00003693 other upstream 984658 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 1601869 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 1606688 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 1766787 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 2260912 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003731 other downstream 328005 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 817550 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 1587422 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 2106755 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 2113702 8869468 ~ 8880126 (+) False XLOC_001922

Expression Profile

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