RNA id: XR_005053514.1


Basic Information

Item Value
RNA id XR_005053514.1
length 4791
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC110518095
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 1277329 ~ 1347922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATctcagagagactcagagagagagagagacagagagagagacagagagacagacagacaaacagagagagacagacagacagagacagagagagagacagacagagagacagacagagagacagacagacaaagagcctgggagacagacaaagagcctgggagacagacaaagacagacagacagacagtatgtctccctcccagtcctccctactactgctactgctgatgGTCTCCTGCTCCTGGGCCTCCCACTTTTTAGGAGGAACCATGACCTTCAACCCCAGAGAGACCAACCCAGACGGAACCTACAGGGTGGACCTTGATTACAAGACAACCTTCCACTCTACCGTCTGCCTAACTGATACCTGGTATTGTATCAGTGAGGACTGTGGGAATGAGATCAGTTTAGTGGTTAACATCGTGGACCAGGGGATATCTGAGGACTGGTGTCAGACAGAGGGAGTCATGACTAGACACGTCTCCAATAACACACAGACCTTTGATCTGCTATTGGATAGCGGAAACTGGATAGATAATGATAATTATGTTAGTGCTTGGAGGCTGTGGACTCATGTGGATCTTGGGGTCAGGTCTGACACGACGACAGTCAACCGATCTCCACAGACCACTGTCATGCCTCTGATGCGtgtcccTGCTAATTGTCCAAGAGATTTCAACCTGTTGTCGTTTGATCCAGACGGGGATGAGGTCAGATGCAGATATGCAGTACCAACGAATGAGTGTGTCACATCAAGTGACCTTCCTAATGACTTCACTCTAAGAGAGAACTGCACCTTGTCATTTTGGGGCAACAGTAATACCACTAGAACATATGCAGTTCAGTTAGTGATGGAAGATTTCCCGactcagtccatctctctctcctatactGACGGATCTCAATCTATCAGGACCTCAAACAACACACTCTGCAAACTACCTGTTCAGTTTGCAGTGAGAGTGGACCCCCCGGTGACATCCTGTATGGAGGGGTTGTACCTACCCATGTTCCTGTCTCCAACACCAGCCCAGGGTGCACTGCTCTACGCCTCTGCAGACCAACCCCTGGAAATCACTGTCAGAGCACAGGCTACCCAGTCCACGGTTTCAGAGCTGTTGGTGAGTGGACCTTCCAGTATCACAGAGAACACCACTGTCCCAGGAGAGTACCTTCTAAGATGGACGCCCactgaggatgaggagggagggtaCTATCCTGTGTGCTTCATCGCTCAGGGAGTGAACGACAATTCCACGTATCACTCTGAGCTGCGCTGTCTGATCGTCAGGGTTGGAAACACAAGTGCCATCAGAACCACAGAGGAACcaacaccctcccctcccctgacaATAAATCTCACAACCACAGAGGAACCaacaccctcccctcctctgacAATAAACCTCACAACCACAGAGGAACCaacaccctcccctcctctgacAATAAACCTCACAACCACAGAGGAACCaacaccctcccctcctctgacAATAAACCTCACAACCACAGAGACACCAACAACCTCCCCTCCTCTAACAACAAACCTCACGACCACACAGATTTCACCTGCACTTCCAAATACCACCCAAACAACTACTGAACTCACAACCACACCCACAAATGTCAGTACGTACGCACCCACAACTACCAATGTGACCACAACTACCACAGCATCCACAACTTTAAGTACACACCCAACCACCGATCTCACAACCGATATTGTGGACGGTACAACAACGAGCAGTGTGCCTAGATACGTTGTTGTACTGAGGATAAAACTGTCCTCTCTGATCGCACTCACAGATGATTACATCAGAAACGTGGTTTTACAGCAGCTCCGTGAGGAACTGATCAGACAAGGGCTGCCAGGGGACTTCGCGCTACGCCTGAGAGCCACTCATGGGATCAGTTCCTGAGGGAGGAACAGGAATTCAGATCAACTTTGATCACTCCTACTTGTCTTTTCTTCCTGGTTCTGATTCTGCAGAAAGTTCTTCTGAAGAAGAAGTGGTTCCTTATAATGACAGAATATGGTTGATTTGTACTAATCTCTTGGGACAGACGCACGTAAAATAAATGATGATATTTGTTCTGGATTGCCAGGATTAGTTGAATGGACTGACTACTTCTGACTGGATGTTAGTTAAATGGACTGACTACTTCTGACTGGATGTTAGTTAAATGGACTGACTACTTCTGACTGGATGTTAGTTAAATGGACTGACTACTTCTGACTGGATGTTAGTTAAATGGACTGACTACTTCTGACTGGATGTTAGTTGAATGGACTGACTACTTCTGACTGGATGTTAGTTGAATGGACTGACTACTTCTGACTGGATGTTAGTTGAACGGACTGACTACTTCTGACTGAATGTTAGTTGAATGGACTGACTACTTCTGACTGGATGTTAGTTGAATGGACTGACTACTTCTGACTGGATGTTAGTTGAATGGACTGACTACTTCTGACTGGATGTTAGTTAAATGGACTGACTACTTCTGACTGGATGTTAGTTGAATGGACTGACTACTTCTGACTGGATGTTAGTTAAATGGACTGACTACTTCTGACTGGATGTTAGTTAAATGGACTGACTACTTCTGACTGGATGTTAGTTGAATGGACTGACTACTTCTGACTGGATGTTAGTTGAATGGACTGACTACTTCTGACTGGATGTTAGTTGAATGGACTGACTACTTCTGACTGGATGTTAGTTGAATGGACTGACTACTTCTGACTGGATGTTAGTTGAATGGACTGACTACTTCTGACTGGATGTtagttaaatgactaaaatgtaaatgttttatgtCCAGAAGAAGAAATACAACATTAATATGTTTTTTAACGTACAGAGGTAGACTGGGGTTCTTTCCTGTTTGGTAATGTACAGAGGTAGACTGGGGTTCTTTCCTGTTTGGTAACGTACAGAGGTAGACTGGGGTTCTTTCCTGTTTGGTAATGTACAGAGGTAGACTGGAGTTCTTTCCTGTTTGGTGATGTACAGAGGTAGACTGGGGTTCTTTCCTGTTTGGTAATGTACAGAGGTAGACTGAGGTTCTTTCCTGTTTGGTAACGTACAGAGGTAGACTGGGGTTCTTTCCTGTTTGGTAACGTACAGATGTAGACTGGGGTTCTTTCCTGTTTGGTAATGTGCAGAGGTAGACTGGGGTTCTTTCCTGTTTGGTGATGTACAGAGGTAGACTGGGGTTCTTTCCTGTTTGGTAATGTACAGAGGTAGACTGGGGTTCTTTCCTGTTTGGTGATGTACAGAGGTAGACTGGGGTTCTTTCCTGTTTGGTAATGTACAGAGGTAGACTGGGGTTCTTTCCTGTTTGGTGATGTACAGAGGTAGACTGAGGTTATTTCCTGTTTGGTAATGTACAGAGGTAGACTGGGGTTCTTTCCTGTTTGGTGATGTACAGAGGTAGACTGAGGTTATTTCCTGTTTGGTAACGTACAGAGGTAGACTGGGGTTCTTTCCTGTTTGGTAACGTACAGAGGTAGACTGAGGTTCTTTCCTGTTTGGTAATGTACAGAGGTAGACTGAGGTTCTTTCCTGTGTCAAGAATAGTTGGTTGAGGCTCAGTTTTCTGTGACATTTTAGTGACAGAGGACACCGGTAGGTAGGACCCACTtgtaaacacccacacacactcaggaaGACGTTTCACTTTCACTCACACATGGAACATAAAGAAGAATGAACAATGAGGTTGAATTGACACTGACGAAAGAGAAGAAATTAACTGACTGacgaaagagaagaagaaatgaATTGGGACTGGAATTGATTGAAATCCTAATTAAAGGTTAAACATATTAAATGTTAAAGGTTGAAAACATTGGGAGATATTAAAGGTGTTAAAATAATGCAGGTAAAGGTAAAGAGAGTTATAATGTAGTTTTCTTTAAGTTGTGAATCATATAGACTGTGTTTGATTCTGCTTAGAGGACAAGGCCTTAGGAGGTTGATAACGAGACGTTATAATGGTCAAATGTTATAATGTTGAAATGTTTAAAATATTGAAGTATTAAAATATAACTGGAGTAATAAATTAGGTTGTAGTAAGATTAGAATTGAGTAAAGGTCGTTTGAAAAATTTATGTTTTAAGAAGTTGATGTTAATGAAGTATAGTAAAGGTGCTAGCTTGATCTGGAAATCCCTTAATGTTACCTCATTGATAGAAGTGTTCTAGTACACTCTAGGTGGAACCCTTAATGTTACCTCATTGATAGAAGTGTTCTAGTACATTCTAGGAGGAACCATTAATGTTACCTCATTGATAGAAGTGTTCTAGTACATTCTAGGAGGAACCATTAATGTTACCTCATTGACAGAAGTGTTCTAGAACATTCTAGGAGGAACCCTTTAGGTTACCTAATTGGTAGAAGTGTTCTAGAACATTCTAGGAGGAATCCTATAGGTTACCTCATTGGTAGAAGTGTTCTAGTAGCTGTTAGTTTTTTAGACACCAACTGAGGGACTGAGCATCCTGAGGGGGGAGACAAAAATCTGTTTATAAGTTGTAGAAGGTAAGAACGTGTTTTTCTTGTTATTAAATACAGTGCTTCTCATTAAAttgtgaaaaaaaatatataatattggTAGACCCTAATAAGGGTTTAGTTAAGGGTTTAGTTAAGGGCGCTCAATTTAATCCAAGGAAATGTTTTGCTTATCATCGATTGGTGATATTGATTTGTGATTGGTTGATCGAGGGTTTTTTATGCCTGTTTCTGGAATTTTGAATAAACTTGCTTTATTGTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU962543 lncRNA downstream 342 1276768 ~ 1277070 (-) True G845154
TU962537 lncRNA downstream 5272 1270970 ~ 1272140 (-) True G845150
TU962532 lncRNA downstream 12353 1264821 ~ 1265059 (-) True G845148
TU962530 lncRNA downstream 12712 1264362 ~ 1264700 (-) True G845146
TU962529 lncRNA downstream 13141 1260791 ~ 1264271 (-) True G845145
TU962719 lncRNA upstream 1885 1349807 ~ 1350061 (-) True G845282
TU962724 lncRNA upstream 14161 1362083 ~ 1362891 (-) True G845287
TU962733 lncRNA upstream 74863 1422785 ~ 1479651 (-) True G845291
TU962761 lncRNA upstream 95558 1443480 ~ 1444676 (-) True G845317
TU962773 lncRNA upstream 113277 1461199 ~ 1462021 (-) True G845328
XM_021617347.2 mRNA downstream 3868 1268630 ~ 1273544 (-) True LOC110533260
LOC118936903 mRNA downstream 65351 1145860 ~ 1212061 (-) True LOC118936903
XM_036989449.1 mRNA downstream 352056 922355 ~ 925356 (-) True LOC118966678
XM_036989450.1 mRNA downstream 355067 916288 ~ 922345 (-) True LOC118966679
XR_005053513.1 mRNA downstream 386144 886116 ~ 891268 (-) True LOC118966677
XR_002474932.2 mRNA upstream 238576 1586498 ~ 1590637 (-) False LOC110533263
XM_036989468.1 mRNA upstream 249427 1597349 ~ 1706114 (-) False LOC110534825
XM_036989469.1 mRNA upstream 249427 1597349 ~ 1706114 (-) False LOC110534825
XM_036989470.1 mRNA upstream 249427 1597349 ~ 1706114 (-) False LOC110534825
XM_036989471.1 mRNA upstream 249427 1597349 ~ 1880906 (-) True LOC110534825
TU962511 other downstream 41704 1234547 ~ 1235708 (-) True G845133
TU962296 other downstream 247416 1028140 ~ 1029996 (-) False G844976
TU962281 other downstream 249970 1025654 ~ 1027442 (-) True G844975
TU962143 other downstream 386654 884160 ~ 890758 (-) True G844866
TU962110 other downstream 430660 844673 ~ 846752 (-) True G844847
TU962835 other upstream 240442 1588364 ~ 1589482 (-) True LOC110533263
TU963104 other upstream 302018 1649940 ~ 1651993 (-) True G845570
TU963237 other upstream 618704 1966626 ~ 1967072 (-) True G845683
TU963392 other upstream 745313 2093235 ~ 2098359 (-) True G845769
TU963461 other upstream 808468 2156390 ~ 2157099 (-) True G845814

Expression Profile