RNA id: XR_002474932.2


Basic Information

Item Value
RNA id XR_002474932.2
length 3844
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC110533263
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 1586498 ~ 1590637 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTTTGACCGTGTTGCGTTGCTGATTGGGCTGTATGAAAAGTCACTAAACCGACGACCAGCGATCCTTCCACATGtgttcagatttttttgtgcCTCCCCCCCGTCAAAGTTGCCCATCTCCGCTCTAACCTAACCTACTGCTGAGCTTTCAACTGGAATATCTGTTGgctttgttttctgtttttgaacAACTAATTGATGGATATCGGTTCAATTCCTTGAATtccattttctttctctttttccttcTTCTGTGAACTCACTGGGCACGTCAGACTGTttctgtgtgatgtagtaggaaCTTGTAGTTTCCTACAGGCCAATAATCAACATAGTTAATTATCACGTTTTATTCACTAAACTacatgaccataatccattgcgtaTCTACTTTGTCCAGTCTACATTTCTTTTTCGGCCTGCTACTGAAGAGACAAGAATGCGCGTGAGTGGATAtagagagcagctgttgcttCGTGATTAATCTCTACCTGGGAAATACGTGAtcaaagtgattgatagttggcaTTCAGCAGTCattaaaagtatgccttatttacttagAAGAACTACAACAGagtttttgtcagacagcataaccagcagctctatagagataataataataaaaataataaagtcatcaaataaaacaaattatataCGCAACTGAAATATGATGAAGTAAAAtaatgtaaataattgttggttAATCAGCAGTCATCGGCAGTCACTATGGGCAGTTATGGGACTTttactgatttttttttattctgtgttgttacaatATTCAACTCAAATAATCAAAACCGAAAACCGAGATAAATAATTAACCCCAAACCCGACTCAAAGCACTCATTGCTCAGCACTACCTATAGCAGAGCGCTTTCCCACACCCAGTTCATTACCACATGGGCCATTCTATCCAAAATGATTGGGATGGTCCTACCCCATTGAAttttacatttaaaatggttagggttaggtaagggttaaggttagggtagggagGTGCCAAGGATCCCGGACAGCACTGACTCTATCCACACGCTCATTGCTGTTACAGAATTCAACCCAAATAATCAAAGCCTGAATCGAAAACAATGGTTTTTGTGTTTATTATAATGAACCGAAACCCAACCCTGTCCACACGCCCAGTACTTAACTTTTCAACACACCCTCTTGACCATAGTCCGGTCTCGGTATCGAGCTGCAGCTCCCTACTTCTCAATGCGAACGTGAGTAGATTACCTTGAAAACAACGGTCGGACATCTAGGAAGCAGTCTCCAGTTTGTATTATACCTCGGTGGTGTACACGGAACAAATATCGACCAGATCTTGTCcggacgacaacaacaacaacgtgtTAAAGgtGTAACCAAGGCTttcagagaacacagagaaacaTGGCTACAGTCTTCATCTGTTCCGTCTGTACCGAAGTCTTCGTTGGACATATATCGCTGAGCTGCCAGCACACCTTCTGTAGACGTTGCCTCCAGAAGAGTATGGACTTCGGTTGCGTTATCTGTCCGGTGTGCGGGGATCCAATCACGTCGGAGAACATCAGAGTCAACAGAATACTAAGGGACATGGCAGATGaagtgagacagagaagagttgATCTCAGAGTGTTGAAGAGGAATGAGGACATTGATGTGAATAACTGGGAAACCGacgagaagaagaagaagaagaaggagaatgTGAAAACATCAAAGTCCTTGGTGAAGGAAGGCCTGGCTgccagaaagacagagaggaagttAAAGTCGTCTCTGACCACTGGTCCCTGGGAGGGTATACTTTTTGGCATTATGGCCTTTTATTGCTTTATTTCTGTGCTTACTTATGTTGTCCTTCCTTGTGTGGAATATGTGTCTGTAACAACGTCAGGAAATGCAGCCAAGGTGTTCGGATCCCCTTTGGTGTTCATGTCTATGTTTGTGGTCTTCGGTGTTGTTGCTCATTTGGTGGATTTTGTGTTGAAAAAGATTATATAAAACAGATTTTAAGTCAGTAATAACTGATTGATTGGTTTTATGCGGTGTTGGAGAGTCATTGGATGTAGCGAACTTCCTTTCCCAGCAGTTTGGTGATAGTTGAACAACTTTTTTGAAATGAATTATCTTATTGAGTTGACTTACATCTGCAGGTTTATGCCCAGTTTATTGATGCTATGATAAGTGCAGTAGATTTTTGTTGTAAAATGAATGTTGTGAAGTATGCTTTAAACTGCGAACTGATTATATGGAAGAAAAGGAGTGTATTTTGTTGTAAAACTTTTTCCTGTAAATTTACCAACATTATACTGTAATTTTGCTTTACAGCAGAGATGCTGTAATATATTTTACAGTTCCTCTTTTCCATACTATAAAACACATTACAGAATACAGCATCCCTGCTTTAAATTTACAGCTGTAAGGTttttacagtagtagtagtattcaaTGTCGGGATTCGTGTCTCCACAACTGCAGTGGGGTTGCCAACAATattatttgaaatgttttatattattatttagtgttattatttttttatttaaacaatATAGAAACATTTTTGAGAAAAATGGGTTCCCTGCTGAAAAAGTTTAAATACCACTGTTTTACAGTAAGGAAAATActactgtaaaatatattacAGCATACCAGCTGTAAAGCAAAATTACAGTATTTAAGCTGGCTACTCTGGTGCCATTACAATGCTGAATATTTACAGTGAAATTCTACCTGAAATCTAAATACAAagaaatatatacatatgtaCATAAAATACATGTATTCAAATAGCTGACAACATTAACTACAAATGAACAACATAATTGACAATAGAAGTAACAACAGTTATCAAATATGTAACCAACGTAAgcatcattacaacactaatTAAAAATTAtattgtgtggctgtgtgtgggtggggtgggggggttgagATCAAATTGGGATTGGGTACAATCCTAGATCTATGATCAGGGGCAACTCTATTTAGGGTAAGGGGGTTCAGAGGCGGTGAAACGGGACAGTTTGGTCAGGAGAGCATCCAGGACAGAGAGAAGTCAGCATCATGTGTTCCTCATGGGGCTCCGTAAACAAACCTCCTCGCGTTCTGATTGGTCAGCTCTTCTCAACCCTAGGACAAGCATAGAAAGAGAAAGACTAGAATGAGCACCATGGCTGTTACTCTGTGGgtaaatagagagacagacagcaccggGGGCTGTTACTCTGTGGgtaaatagagagacagacagcaccggGGGCTGTTACTCTGTGGgtaaatagagagacagacagcaccaggggCTGTTACTCTGTGGgtaaatagagagacagacagcaccggGGGCTGTTACTCTGTGGgtaaatagagagacagacagcaccgtGGGCTGTTACTCTGTGGgtaaatagagagacagacagcaccaggggCTGTTACTCTCTGGGTAAATAGAGAGACAGCAACAGGGGCTGTTACTCTGTGGGTAAATAGACAGAGGACAAGGGACATATCAAGCTGGTGTTGTGTCTACGTACTTAACTACAAATCTACAGTAGGCATAAGCTATTACTGTAAAGAAATGATACAGAATGACGTGAGGATTTCCTCCAGGAGGCTTCCAattacagtaaataacagtattttTCAGCATTTTACCCATAATGCAGTGCAATCTATAACATTATTGCTCTAAGACACATGTATGGTATTTTACTGTGCCTTCTACAGTGTTTTAATGTTGACATGACAGTCTTACACTACATAGCTTTTCTCCATTTGAGAAGACACTAACCTATTTGTAttgaaatgtaataaaaatataattctgtTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU962814 lncRNA downstream 39169 1539295 ~ 1547329 (-) True G845362
TU962803 lncRNA downstream 43843 1512666 ~ 1542655 (-) True G845354
TU962801 lncRNA downstream 73476 1510884 ~ 1513022 (-) False G845354
TU962802 lncRNA downstream 73476 1510884 ~ 1513022 (-) False G845354
TU962807 lncRNA downstream 77618 1504471 ~ 1508880 (-) True G845356
TU963061 lncRNA upstream 2947 1593584 ~ 1595573 (-) False G845543
TU963063 lncRNA upstream 2947 1593584 ~ 1595573 (-) False G845543
TU963064 lncRNA upstream 2947 1593584 ~ 1595573 (-) False G845543
TU963065 lncRNA upstream 2947 1593584 ~ 1595573 (-) False G845543
TU963066 lncRNA upstream 2947 1593584 ~ 1595573 (-) False G845543
XM_036989462.1 mRNA downstream 238576 1277412 ~ 1347922 (-) False LOC110518095
XR_005053514.1 mRNA downstream 238576 1277412 ~ 1347922 (-) False LOC110518095
XM_021617347.2 mRNA downstream 312954 1268630 ~ 1273544 (-) True LOC110533260
LOC118936903 mRNA downstream 374437 1145860 ~ 1212061 (-) True LOC118936903
XM_036989449.1 mRNA downstream 661142 922355 ~ 925356 (-) True LOC118966678
XM_036989468.1 mRNA upstream 6712 1597349 ~ 1706114 (-) False LOC110534825
XM_036989469.1 mRNA upstream 6712 1597349 ~ 1706114 (-) False LOC110534825
XM_036989470.1 mRNA upstream 6712 1597349 ~ 1706114 (-) False LOC110534825
XM_036989471.1 mRNA upstream 6712 1597349 ~ 1880906 (-) True LOC110534825
LOC110534823 mRNA upstream 307236 1897873 ~ 2003474 (-) False LOC110534823
TU962511 other downstream 350790 1234547 ~ 1235708 (-) True G845133
TU962296 other downstream 556502 1028140 ~ 1029996 (-) False G844976
TU962281 other downstream 559056 1025654 ~ 1027442 (-) True G844975
TU962143 other downstream 695740 884160 ~ 890758 (-) True G844866
TU962110 other downstream 739746 844673 ~ 846752 (-) True G844847
TU963104 other upstream 59303 1649940 ~ 1651993 (-) True G845570
TU963237 other upstream 375989 1966626 ~ 1967072 (-) True G845683
TU963392 other upstream 502598 2093235 ~ 2098359 (-) True G845769
TU963461 other upstream 565753 2156390 ~ 2157099 (-) True G845814
TU963853 other upstream 1052672 2643309 ~ 2643647 (-) True G846125

Expression Profile