RNA id: XM_036989490.1


Basic Information

Item Value
RNA id XM_036989490.1
length 3228
RNA type mRNA
GC content 0.54
exon number 10
gene id smyd4
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 3280610 ~ 3307832 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTTTCAATTTCGGTGACGTCAACACATCGCGACTTCCGGATTCTCGATGACTGCCGTTAGAAGAGAAACTGCGCGCTGATTTTGAGCCTCAACTACCAATTTACATTGAGATCTAGCAGTCTGTATAACCAAAATGGATACGCAGTTTCTGAAAATACCACCGAAGCGCACATGAGTTTCTCTCCAACTACAGTGTAACGTTAGTTTCACATAATGGACCTGCCGTGTGTCGAGTGGCAAAAGCATGTGGAACAGAAGTGGAGCCGACTAACTCTTGATGAGAAGAAATGCTTCTCGTCCCTGTTGGACATAGATGAGGTCTTTGATTTTGGCCTGTCTCAAGTAAACCAAGAGGACGTGGACTTTCTGTCGGGCATTTCCAAGGACGATCCTGTCCAGAAGGACCTGGAGCGAGCTGCCAGATGCCGGAAGGAGGGCAACTGCAGCTTTAAAACCAGGGACTACACTGCGGCTGTCCTGCACTactcacagGGTGTGTGTCATGCGTCTCTGAGCTCGGAGCAGCTCTCTCTGTGCTATGCCAACCGTTCTGCAGCGCTATTCCACCTCCAGCGCTACAGGGAGTGCCTCGAGGACATCGACAGAGCCCTGAACCATGGCTACCCAAGTCACCTGAAGCACAAACTACAGGACAGACAGGCACAGTGCCTCAACCACTTCCCCAACGGGACAGAGGGGATAACCACCGCCAAGCAGGGGGCGGGGCACCAGGCAGAGGGGGTGTGTAGCAGGACCAACTCAACAAAGCCCAACCCAAAGTCCCCAAACTCCCAGCAGCAGAATGGGAGTGCCTCCGTGTCGTGTCTCTCACCTGGCTTGTCCGTGTGCTTCAGCCCTGAAAAAGGGCGACACCTGGTGGCCACCAAGGGAATCGCGGCCGGAGAGGTGATATTGGAGGACAGGGCTTACAGCTGTGTGCTTATAccaggggtggggggagggagaagagaggagactgaGGAAGCAGGAAGAGTGTTTGGGACCGAGGTGAGGTACTGTCATCAGTGTTTGAGGGAGACGGTGAGCCCTGTGCCATGTGAGGGGTGCAGCTACGCCCGCTACTGCTCAGAGGGGTGTCGGAGGGGCGCGTGGGAGTGGCATCATCGCTGGGAGTGTCCAATCGGAGCCGAGCTGAGTACTGCGGGAGTGATGTCACAGCTGGCGCTGAGGGTGGCGTTAAAAGCGGGGGTGAAGGAGGTACTGAAGGCACGGGAACCAATCAGAGACGCAGATAATGATTCTAAACTAATCAGAGAGAAGATTAGCGCCAATAATTCCAGTTCTAAGCCAATCACAGAAAAGATCCGCCCAAAGATGAAGAATTCTGGGTCCAGTGAAGCCACCTCAACTGAGCCGGAGGTCAACGACCCCTCTGCTTATTACCATGGTGATTCCTACCTGAGCGTCTACCACCTGCTGCCTCACCTGAATGGCCACGCCCCCAGCCTGTGCTTCTTGTGCTCTGTCACCATAGCAACGCTCTACCTGCGGCTGCGCCAGGCGGGACCTCCACCTGTGtcctgggagaggggaggagccTCAGAAAGCATGACGTGCAGTAACCAATCGCGGGCCCCCGAGGATGGAGAGGGCTGGGCTCCGGAGCTAAGCCTGCTGGGAAGTGTAGCTCTGAGGCACATGCTGCAGCTGAGATGTAATGCCCAGGCAGTGAGCCTGCTCAGAGACACAGGTGATTTTACTGCGGTGCAGTCCACCCAGGAAGTGCGCATTGCCACGGCAATATTCCCCACACTGAGTATCCTAAACCACTCCTGCTGCCCCAACACAAGCCTCAACTTCAGGACCTCTCACTTGGTCTCACCTCAACCAGACCGAGGCTCTACTGATGTTCTGGTTTCCACTGAGCCTGTTTCTACTGGTCCTGAGGCCTGTTCTGCTCCTGTCTCCGTCTCAGCTGGAGTAGCTGTCTCTATCAGAGCATCCAGAGACATCTGTCCTGGACAGGAAGTCCTCCACTGTTACGgTCCTCACAGCAGCAGGATGGTGTTGTGTGAGCGTCGGCGACTCCTACAGGAGCAGTACCACTTCCTGTGTCTCTGTCAGGCCTGCAGTCTGGAGCAGGGGGAGGGGCCAGAGGGCGGAGGGGCAGGGCCAGAAACACATCTGCAGTGTGGGAAGTGCGAGGGACCTGTAAAGcagtGCAGCGTGGACAGTGCAGGGTGGTTCGTGTGTGTGCGGTTGTCTTGCGGTCATCGTGTGTCACGCTCTGAAATGGACCTCAGACTGCAGGAGGTCAGAGTTCAGCTGGAGCAGGCAGTGGACctcctggagacagacagaccagACCAGTCTGTCATGTTGTTACAGAGAGCAGTGTCTCAGGCTGGTGTCTTCCTGAAAGAGACTCATTCTCTACAGGGACAACTGGCTGATACCATGGCCAGAGCATATTCCACTATGGgtGAGTGGCGAGGGGCAGCGTGCCAGTTGGAGCGTAGTGTTTTAGCCATCCGTTCCCAGTACGGACAGGACAGTATTGAACTGGGACGTCAGCTCTTCAAACTGGCACAGCTACACTTCAATGGagGTTccccaggtccagctctctctgtGATCTCCAGGGCCAGAAGACTCCTGTCCCTCCACTGTGGACCCCACTGTCCTGAGGTACAGGAACTACAGTCCATGGAGGACTGTCTACAGGGGGTGTTGTAGGACTGTCTACAGGGGGTGTTGTAGGACTGTCTACAGGGGGTGTTGTAGGACTGTCTACAGGGGGTGTTGTAGGACTGTCTACAGGGGGTGTTGTAAGACAggcagggagtgagtgagtgattgattGAGTGTTGTAGTACTTGAGACCGGTCTCTTTGAGTCTCTCAATCTTGTCTCTGTGTAGGACACATTTGTCCTctgtcttgactcggtctcagaCTGTGAGGACTCTTCATTTCTTCCTGAGACCTGCCAAGACcagcagagtaaaaaaaaaacattatcagCCTCCAATCAATAAGTGAATAAAACCGCTTGGCCAGGACAAATATATCCACTCCTTCGTTGAAACATCTAATACCTGAACAGCCTTTAAATCTGTTCTAGACACAGTGGTGAACCTGGTGAACCTGGGCCCTTTGCTGCAGTCCATGATCAGAAGTGCCCTCTTTAGCCTCCTGGGTGGAATGTTTTTCATATTGTTCCTAATTAATGaagtttataaaaaataaatgaaattccGGTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU964443 lncRNA downstream 11393 3267749 ~ 3269295 (-) False G846600
TU964398 lncRNA downstream 17150 3263189 ~ 3263538 (-) True G846567
TU964365 lncRNA downstream 117137 3163314 ~ 3163551 (-) True G846547
TU964323 lncRNA downstream 196888 3083215 ~ 3083800 (-) True G846506
TU964266 lncRNA downstream 217527 3058347 ~ 3063161 (-) False G846457
TU964462 lncRNA upstream 3571 3311403 ~ 3311608 (-) True G846614
TU964469 lncRNA upstream 13131 3320963 ~ 3321194 (-) True G846621
TU964474 lncRNA upstream 32395 3340227 ~ 3340454 (-) True G846625
TU964858 lncRNA upstream 36006 3343838 ~ 3432780 (-) True G846931
TU964899 lncRNA upstream 110794 3418626 ~ 3419052 (-) False LOC110492805
XM_021617354.2 mRNA downstream 89803 3188962 ~ 3190885 (-) True LOC110533270
XM_021617353.2 mRNA downstream 127413 3151322 ~ 3153275 (-) False LOC110533269
XR_005053547.1 mRNA downstream 127432 3151322 ~ 3153256 (-) False LOC110533269
LOC110534828 mRNA downstream 187477 3092535 ~ 3093211 (-) True LOC110534828
XM_036934546.1 mRNA downstream 200702 3071880 ~ 3079986 (-) False LOC110534827
XM_036989492.1 mRNA upstream 110632 3418464 ~ 3577074 (-) False LOC110492805
XR_005053548.1 mRNA upstream 132890 3440722 ~ 3577074 (-) False LOC110492805
XM_036989493.1 mRNA upstream 325565 3633397 ~ 3676854 (-) True LOC110491256
XM_021564603.2 mRNA upstream 608814 3916646 ~ 3923466 (-) True LOC110491262
XM_036989506.1 mRNA upstream 622366 3930198 ~ 3959902 (-) False LOC110492807
TU964312 other downstream 127465 3151390 ~ 3153223 (-) False LOC110533269
TU964313 other downstream 127465 3151390 ~ 3153223 (-) True LOC110533269
TU964319 other downstream 203181 3072634 ~ 3077507 (-) True LOC110534827
TU964042 other downstream 527585 2748953 ~ 2753103 (-) True G846290
TU963853 other downstream 637041 2643309 ~ 2643647 (-) True G846125
TU965880 other upstream 1108774 4416606 ~ 4419950 (-) False G847740
TU965963 other upstream 1259980 4567812 ~ 4569190 (-) False G847774
TU965964 other upstream 1259980 4567812 ~ 4569190 (-) True G847774
TU966039 other upstream 1428697 4736529 ~ 4741588 (-) False G847843
TU966040 other upstream 1428697 4736529 ~ 4741588 (-) False G847843

Expression Profile