RNA id: XM_036989511.1


Basic Information

Item Value
RNA id XM_036989511.1
length 2922
RNA type mRNA
GC content 0.54
exon number 14
gene id LOC110533249
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 4262779 ~ 4283484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATCTTCTGCCCAATGCCACTGTAACATGCCCGGAAGGACAGCCGTAAAGCGTTGTGGTTAAGGAGGTCATTGGAAAGTGAGCTGTTTGCTAGCTACCTGGGCCGGTTCGGGGGGACAGAAAGACACTTTATTGCTACCATTGGTATCAGACATTCTGTTACCTGAGTAGCTCAAACTGAATCTAAAAGCTGTTTCAGCGACTAAACTTATAAAGGCGAAATGCTCCGTCTGGTCCTGCGGCTGAGGCCGTCTGCAGGGTTGCCTCGGTCCCGCGGTGCCCATCCTGAGCTTGCCCTGAGCTCTCGTCCCGTTCGGGGACCCTGTCATCTGAGGCGCTACCACGGCTCTGTCCGGTCCAGGGCTGTTTGCAGTGGAGGTCGTTTCAACACGGTGGTCTTCGCCAGCAGAGCCCTGCTACAGCCCGCCCAGACACAGCGCTTCTACAGCCTACCACCGCACCAGAAGgtggAGCTTCCTGCTCTGTCCCCCACCATGCAGACTGGAACCATCGCTCGCTGGGAGAAAAAGGAGGGAGACAAGATCAACGAGGGAGACCTGATAGCAGAGgtggaGACTGACAAGGCCACGGTGGGGTTTGAGCTGTTGGAAGACTGTTACATGGCCAAGATCCTGGTACCTGAAGGAACTAGAGACGTTACTGTGGGAGCAGTCATCTGCATCACCGTTGACAGTGCTGATCTGATCCCGGCCTTTAAGGACCTGACATTGGAGAAGCTTTCTGCTAGCTCCGCCTCTTCTGCAGCTGTCCCTCCCCCTGTAGCAGCCCCGCCCCCTGCTCCCTCCCCCGGAAGCTCCCTACCCACTCACATgaagGTGTGTCTGCCAGCCCTGTCTCCTACTATGACCATGGGGACAGTGCAGCGCTGGGAGAAGAAGGTTGGAGAGAAACTCAGTGAAGGAGATCTACTGGCGGAGATAGAGACCGACAAGGCTACCATCGggttTGAGGTGCAGGAGGAGGGTTACCTGGCGAAGATCATGGTGTCTGAGGGAACGCGTGACGTTCCTCTGGGCGCTCCTCTCTGCATCATCGTGGAGAAGGAGAGTGACATCGCTGCCTTCAGTGACTACGTAGAGACAGCAGGGGCTGATGTCTCCACCCCACCCCCCGCCCCGGTTGCAGCCCCAACTCATGCAGCGCCCCTCCCTAGCCCAGCCCCCGTTGCCCCAGCAACCCCCAGGAAAGGGCGTGTTTTCGTCAGCCCGCTCGCCAAAACGCTCGCTGCTGAGAAGGGCATTGACCTGGCCCAGGTCAGCGGCTCTGGTCCTGATGGTAGAGTCACCAGGAAAGACATTGAGACCTTTGTCCCTCCCAAGGCTGTCCCTGCTgctcCAGTGTCAGCTGCTCCTAGCCCTGCCTCTACTCCCTCCCCAGCCGTTGCCGTGTCAACAGGCACCTTCACCGACATCCCCATCAGCAACATCCGACGGGTGATAGCCCAGAGGTTGATGCAGTCTAAACAGACCATTCCCCACTACTACCTGTCTGTTGACGTCAACATGGACCAAGTCCTGGAACTACGCATGGAGCTCAACGCTGAGGTAAAGGCCCAGAACATCAAGCTGAGTGTGAATGACTTCATCATTAAAGCCAGTGCTCTAGCCTGCCTTAAGGTCCCTGAAGCCAACTCCTCATGGCTCGACTCTGTTATCCGGCAgaaccATGTGGTGGATGTGAGTGTGGCGGTGAGTACACCCAACGGTCTGATAACGCCCATCGTGTTCAACGCCCACACCAAGGGACTGGCTGCAATCAGCTCTGATGTCTCAGCCCTGGCTGCCAAGGCCCGCGACGGGAAACTACAGCCGCATGAGTTCCAGGGAGGCACGTTTACCATCTCTAACCTGGGAATGTTTGGCGTCAAGAACTTCTCAGCCATCATTAACCCTCCCCAGGCCTGTATACTGGCAGTAGGGGGCTCAGAGAAGAGACTGCTGCCCGCTGACAATGAGAAAGGGTTTGATGTGGCCAGCATGATGTCGGTGACGTTGAGTTGTGACCATCGCGTGGTGGACGGAGCGATCGGAGCTCAGTGGCTCGCAGAGTTCAGGAAGTTCCTGGAGAAGCCTGTCACCATGCTGCTCTGATTGGACAACTCTCTCACCAGGCCATGCTGTGGTTGGCTGCAGCCGTCGGcaagctgatctgattggtggaAACCTTTTCATCATGCTTCTGTGATTAGCTGGCCCACCACAAGGACACTCCCCCTTAAAGGGGTGAGGCAGGACTCACTCCCCTCCCAGAGTATAacacccctccccatctctctctctttatttattgCGACCACATAGTTACAGTTTAGACCAGAAGCCATAATGTCACTCATGTTTATAAAGGGAACTGTTACAGACccgcccctgtgtgtgtgtacaaagaGTATTGGAGATTGTGTTTAAAAGCCAAAGTAAGATGTAGAATGCCCCCTAGACTCACTCACATGCCCACTGCAGACCACCCTAGCTCCTCTGAAGAACCATATGTTGTGAACACATTGACAGTTCTGCTGGTTGTATGTTCTCCCTTGTAGTTTGTTCATTGATTGATTGGCCAGAGTTCACTCACCTACCTATATTAAGTCTTCAGAGGGGAAGATCGCCAACCGGCCATGCTGCTTATCTCCAGGTGTGGAGCTGATCTATTGGTACCTTCTATAATGCTGTAGGATTGGTGGAATCTTCATTTACAGAGTAGGAGAGGCTTTATTCATGACATCACTCCTGACTAAGCTCTCTGCCAATCCCCTTCTTCTCCAGGACATGTTCTTGTTTTCTAACCCTTGATAAAGAACTTTCTATTTACATGACATCATCTGTAAACAAGTGAAACTGGATATATGGTTTCCATGGAAATTACTGCTGAATAAATTGAAATGAGTCAAAATGAGCTACTATG

Function

GO:

id name namespace
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0006086 acetyl-CoA biosynthetic process from pyruvate biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0045254 pyruvate dehydrogenase complex cellular_component
GO:0004738 pyruvate dehydrogenase activity molecular_function
GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity molecular_function

KEGG:

id description
K00627 DLAT, aceF, pdhC; pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU965693 lncRNA downstream 122028 4136973 ~ 4140751 (-) True G847567
TU965715 lncRNA downstream 152199 4110381 ~ 4110580 (-) True G847588
TU965714 lncRNA downstream 152701 4109877 ~ 4110078 (-) True G847587
TU965713 lncRNA downstream 156478 4105975 ~ 4106301 (-) True G847586
TU965698 lncRNA downstream 196560 4062147 ~ 4066219 (-) True G847571
TU965839 lncRNA upstream 39153 4322637 ~ 4323090 (-) True G847705
TU965834 lncRNA upstream 82295 4365779 ~ 4381030 (-) True G847700
TU965861 lncRNA upstream 102616 4386100 ~ 4388424 (-) True G847725
TU965884 lncRNA upstream 130696 4414180 ~ 4416442 (-) False G847741
TU965882 lncRNA upstream 130782 4414266 ~ 4416406 (-) False G847741
XM_021617326.2 mRNA downstream 114470 4140817 ~ 4148309 (-) True cfap300
XM_021617325.2 mRNA downstream 154847 4088926 ~ 4107932 (-) True LOC110533247
XM_036989507.1 mRNA downstream 267024 3968210 ~ 3995755 (-) True LOC110491261
XM_036989508.1 mRNA downstream 267073 3968210 ~ 3995706 (-) False LOC110491261
XM_036989510.1 mRNA downstream 267181 3968210 ~ 3995598 (-) False LOC110491261
XM_036989518.1 mRNA upstream 2601 4286085 ~ 4301348 (-) False c10h11orf1
XM_036989516.1 mRNA upstream 2601 4286085 ~ 4301364 (-) False c10h11orf1
XM_036989517.1 mRNA upstream 2601 4286085 ~ 4301670 (-) False c10h11orf1
XM_036989513.1 mRNA upstream 2601 4286085 ~ 4301682 (-) False c10h11orf1
XM_036989514.1 mRNA upstream 2601 4286085 ~ 4301683 (-) False c10h11orf1
TU964445 other downstream 962291 3267749 ~ 3300488 (-) True G846600
TU964450 other downstream 980906 3280610 ~ 3281873 (-) True smyd4
TU964312 other downstream 1109556 3151390 ~ 3153223 (-) False LOC110533269
TU964313 other downstream 1109556 3151390 ~ 3153223 (-) True LOC110533269
TU964319 other downstream 1185272 3072634 ~ 3077507 (-) True LOC110534827
TU965880 other upstream 133122 4416606 ~ 4419950 (-) False G847740
TU965963 other upstream 284328 4567812 ~ 4569190 (-) False G847774
TU965964 other upstream 284328 4567812 ~ 4569190 (-) True G847774
TU966039 other upstream 453045 4736529 ~ 4741588 (-) False G847843
TU966040 other upstream 453045 4736529 ~ 4741588 (-) False G847843

Expression Profile