RNA id: XM_036989514.1



Basic Information


Item Value
RNA id XM_036989514.1
length 805
RNA type mRNA
GC content 0.49
exon number 4
gene id c10h11orf1
representative False

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 4286085 ~ 4301684 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atatatatatatatacagttttttatataaaatgtttttttcaattGTATATATTGTAATCTTGATTCGTTgttaatgaaataaaaaataaaataagttttTAAAAAAACTGTACATTTACGAAGGCACCCATAGGGCTTATGTGGACGGATCCGCTGTTTGCGCAGAGCTGCTGGTTGTGTCACATCGCCAAGGAAACGCTTGACAATAGAGGAGCGTGCAGGAGTTCTGTCCCCAAGTCCAGTTCACGCTGTCAGCAGCAGGATGTCGTTCCCATGGACTTtttcctctcctccgttccaCTACATGCTGCGTGCGTCTGGGCAGAGTGAGGTATGGAGCGACGCACGGCCGGAGGACAAGTTCCATCAGTATGGCTGGCGCTGCGGAACCAGCGAGGACGGATATGGTACCAGGACTCTGATCGGTAACTGGGTCGAACAACAAAAAGACATCACTCAATACCGGAAAGCCAGACCCCTTCCTTCACAGGTCAGACCCCTTCCTTCACAGGTCAGACCCCAACCTTCACAGTTCTCTCACTACTTTGACTCCACCTACTCCTCCTCATTTAACCGTGAAGAGAAGAGACCCATCTACAGCTtgagGAAGGAGTCCAAGAGTTTCCCGGGCCAGCAGCTGGAGTTAGACCTCCCCCAAGAGGGACTACACCaacaccagtcacacacacaccacaccccccCCCGTCTGGGACTGTGACGCTGCAGGATGCCAGGGGACAGCAGGAGAACACAGCGAGCAGAGCAGCATCCTTTTGACCCCTCAATAAATACTGATAAGAGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU965693 lncRNA downstream 145334 4136973 ~ 4140751 (-) True G847567
TU965715 lncRNA downstream 175505 4110381 ~ 4110580 (-) True G847588
TU965714 lncRNA downstream 176007 4109877 ~ 4110078 (-) True G847587
TU965713 lncRNA downstream 179784 4105975 ~ 4106301 (-) True G847586
TU965698 lncRNA downstream 219866 4062147 ~ 4066219 (-) True G847571
TU965839 lncRNA upstream 20954 4322637 ~ 4323090 (-) True G847705
TU965834 lncRNA upstream 64096 4365779 ~ 4381030 (-) True G847700
TU965861 lncRNA upstream 84417 4386100 ~ 4388424 (-) True G847725
TU965884 lncRNA upstream 112497 4414180 ~ 4416442 (-) False G847741
TU965882 lncRNA upstream 112583 4414266 ~ 4416406 (-) False G847741
XM_036989511.1 mRNA downstream 2601 4262779 ~ 4283484 (-) True LOC110533249
XM_021617326.2 mRNA downstream 137776 4140817 ~ 4148309 (-) True cfap300
XM_021617325.2 mRNA downstream 178153 4088926 ~ 4107932 (-) True LOC110533247
XM_036989507.1 mRNA downstream 290330 3968210 ~ 3995755 (-) True LOC110491261
XM_036989508.1 mRNA downstream 290379 3968210 ~ 3995706 (-) False LOC110491261
XM_021617332.2 mRNA upstream 8124 4309807 ~ 4363958 (-) True alg9
XM_036989527.1 mRNA upstream 703263 5004946 ~ 5052396 (-) True kl
XM_036934549.1 mRNA upstream 842821 5144504 ~ 5280794 (-) True LOC110533265
XM_036989529.1 mRNA upstream 1157048 5458731 ~ 5479247 (-) True LOC110533267
XM_036989530.1 mRNA upstream 1180512 5482195 ~ 5499373 (-) False LOC110534826
TU964445 other downstream 985597 3267749 ~ 3300488 (-) True G846600
TU964450 other downstream 1004212 3280610 ~ 3281873 (-) True smyd4
TU964312 other downstream 1132862 3151390 ~ 3153223 (-) False LOC110533269
TU964313 other downstream 1132862 3151390 ~ 3153223 (-) True LOC110533269
TU964319 other downstream 1208578 3072634 ~ 3077507 (-) True LOC110534827
TU965880 other upstream 114923 4416606 ~ 4419950 (-) False G847740
TU965963 other upstream 266129 4567812 ~ 4569190 (-) False G847774
TU965964 other upstream 266129 4567812 ~ 4569190 (-) True G847774
TU966039 other upstream 434846 4736529 ~ 4741588 (-) False G847843
TU966040 other upstream 434846 4736529 ~ 4741588 (-) False G847843

Expression Profile