RNA id: XM_036989601.1


Basic Information

Item Value
RNA id XM_036989601.1
length 1280
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110533307
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 7684889 ~ 7693572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTTTAGACCGTGTGATCACTTCCGGTTCAAAGTTTGAGGAGGTCACGGTGTCCTTCCACACGTGTGTTTCCAGGCATAACTAGTACTCGCATTACAGTAGCTGGTAACTGGAACTTGGGGCTTATCAAACcattgtattttttttcatttatttactaGTCAAATTGACCAACCTATAATCATGCTAAAGATGCTTTCCCGAGCGGTGACTACCGCAGTCCGAATTTCTACATCCACAATGTCCTCGACTGGTGCTCTCCATCCTCTTGCCAGATCGGCGTTATGCTCTCCAAACTCGGGAACAATCCGGCCGTTCACCCGGTCTCTCTGGGTGATGAGCAATAATGGTGCAGCATCGGGGTACCGACCGAAACTCTTGGGTTCAAAAGGACCGAGTCCTGTATCCTGTGAATGTGTGTCGCTACATACGGAAGGAGACAAAGCCTTTGGAGATTTCCTGTCTGATGAAACGAAAGAAGAGAAGAAAATTCAGAAAAGCAAGACTCTTCCCAAGATGTCTGGAGGGTGGGAGCTAGAGCAGAACGGCACAGAAGCCAAACTCATCAGGAAGCTCTCTGGAGAAAAAGTGACGGTCACATTCAACATCAAcaacagtgtttcccctaacTTTGAAGAGGAGGCTGAACAAGTGCAAGGACAGAAGCCGGCAGAAAGTGAGCCTGATATTGTGTCCACACCGAACTTTGTTGTCGAGGTGACGAAACCAGCAGCAAAACATTCCTTGGTGTTTGACTGCCATTATCCTGAAGATGAGGTAAGCCATGgtgaaggggaagaggagagcgACATCTTTTCCATACGGGAGGTCAGTTTCCAGCCCGAGGGAGATGGAGAGTGGAAGGAGACGTCCTACACACTCAACACAGAGTCTCTGGATTGGgctctgTATGACCACCTGATGGACTTCCTGGCTGACCGGGGGGTTGACAACACGTTTGCTGATGAACTGATCGAGCTGAGCACTGCCATGGAGCATCAGGAATACGTCAAGTTCCTGGAAGACCTTAGTGGCTTTATCAAATGCAATTAATGTGTATGTAGATGGAACAAAATTAACTGAAATTTAAACATGTGGCTTAGACACCATCCCCCTCTAAATATTTTCCATTGGTTTCCCAATCTAATTTTGTGGAGTGGGGGAGGGTATAGGTACAAGAATTGTTGCATTTGATGTTTCTGCAGCTTTTAATTTCATATTGAATCACTTTGCTGCACCTTACTGTAACTGATGTTAATATAAAAGGCCGCTAGTATCGA

Function

GO:

id name namespace
GO:0005759 mitochondrial matrix cellular_component

KEGG:

id description
K15414 C1QBP; complement component 1 Q subcomponent-binding protein, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU968940 lncRNA downstream 43499 7559076 ~ 7641390 (-) True G850233
TU968985 lncRNA downstream 45139 7636722 ~ 7639750 (-) True G850266
TU968961 lncRNA downstream 95469 7586816 ~ 7589420 (-) True G850243
TU968912 lncRNA downstream 132168 7551930 ~ 7552721 (-) True G850214
TU968936 lncRNA downstream 133953 7550341 ~ 7550936 (-) True G850229
TU969003 lncRNA upstream 284 7693856 ~ 7695450 (-) False dhx33
TU969004 lncRNA upstream 284 7693856 ~ 7695450 (-) True dhx33
TU969005 lncRNA upstream 6058 7699630 ~ 7700425 (-) True G850281
TU969031 lncRNA upstream 89860 7783432 ~ 7784602 (-) False G850305
TU969032 lncRNA upstream 89860 7783432 ~ 7784602 (-) True G850305
XR_002474943.2 mRNA downstream 2061 7674779 ~ 7682828 (-) True LOC110533309
XM_036989600.1 mRNA downstream 14111 7481614 ~ 7670778 (-) True LOC110533304
NM_001124665.1 mRNA downstream 214950 7457304 ~ 7469939 (-) True LOC100136697
XM_036989597.1 mRNA downstream 376639 7080591 ~ 7308250 (-) False LOC110533297
XM_036989603.1 mRNA upstream 277 7693849 ~ 7725035 (-) False dhx33
XM_036989611.1 mRNA upstream 100030 7793602 ~ 7893154 (-) False LOC118966703
XM_036989610.1 mRNA upstream 100030 7793602 ~ 7893155 (-) True LOC118966703
XM_036989612.1 mRNA upstream 287776 7981348 ~ 8092260 (-) True LOC110534844
XM_021617406.2 mRNA upstream 508063 8201635 ~ 8238760 (-) False ankfy1
TU968510 other downstream 241272 7440903 ~ 7443617 (-) False G849864
TU968513 other downstream 241272 7440903 ~ 7443617 (-) False G849864
TU968514 other downstream 241272 7440903 ~ 7443617 (-) True G849864
TU968262 other downstream 552324 7131280 ~ 7132565 (-) False LOC110533297
TU968253 other downstream 602119 7080591 ~ 7082770 (-) False LOC110533297
TU969056 other upstream 47730 7741302 ~ 7746624 (-) True G850323
TU969585 other upstream 737959 8431531 ~ 8432041 (-) True G850763
TU971979 other upstream 2768684 10462256 ~ 10462650 (-) True G852802
TU972516 other upstream 3311537 11005109 ~ 11005658 (-) True G853244
TU973046 other upstream 3748680 11442252 ~ 11442590 (-) True G853740

Expression Profile