RNA id: XM_021617543.2


Basic Information

Item Value
RNA id XM_021617543.2
length 2894
RNA type mRNA
GC content 0.49
exon number 5
gene id fam53c
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 9676744 ~ 9689487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTTGCTTTTTATTTAAAGCATAAATTCCGAGCTATTTTAATGTTGACATATTTTGTATGCACTATTGAATACTCACTGCttgcccccaccccacccccaactGTAAATGTTATTTATGAATTCCAATCGCTTACGGGCgtgtgaatgttttttttttttaaatggacgaCTGGATGAATTGCTTGTAGGCGATGTATTTTTCAAAGAGAGATAATATCTTTAGATATTTGGCACGCTGATCATATTACATTTTATGTTCCAGATATTGGAATCGACGAATGGTCTGTTACATGTTATGCTTTTTAATGGGTCAATACATCGGAGACCCATAGCCGAACACTAGCGCGGCTGACTAGTCGGGAACTGCACAGGCTACAAATTAGGTTTATCCTTCATGAGCAGTATTTAACCCGTGTGTGCAAGGCCTAAGGTCCGGTGGGCTTCTTGGTCAAGGTGAGCTGACTACAGTGATGAACATGCCCCAGTGAGACAGGGCAGGGCAACCTGGCCCAGAGGAGTACTGGAGGTGCCAGAATAGCTTGGATACTCACAATCAGACGGACGAACAGACAGAGGGCCACCCCTCCCCCTaaccctccacctcacccacctcCCCTACTCCTCGCAACCATGCCATGGTCACACTGATCGCCGAGCGTCTGCGGGAACATATTCTGGACGGCAACACTCACAAAACGGCCCTCAACGTGTCTCTGCTGGACCCCAACCTAGGAATTTGCTGGCCTGCAGATGGATTGATGCCTGAGAGCAGTTATTGGCAGTTCAGCCCTCCCTCCAAGCCTGGCCTGCAGGGTGTGCTGAGCTCCAGTTTCCCCCCTGGCCCTGTCCCTTTGGTTTCCCCCGAAACCCACCTCCCAGAGGGGGAAGCCCTGCACCGGCCCCTGGTCCCAAGCACCTCAGTAACGGACCTGTCTTTTCCCGGTGCACCCCCTCCCCCCCCGCCACCCCCCAAACGCCACTGTCGCTCACTGTCCGTGCCAGAGGACCTTTCACGCTGCCGTTACACCTGGCGGCCCAGCGCGTCGAGGGTCTGGACACCTGTGAATCGCCAATGCCACAGTGGAGGGGGAGCGGGGGGGCCTTGTCCGCTTCGTGCTCCTAGCTCGTCTCTAAActcctctctacactcctctTCAAGCCCCACATTCTTTAGCCTTGCTCTCTCCCCTGACTCCCCACTGCCCTGGAATTTCCCATGGGACCCAAGTGACACTGCTGGAGGAGGCGCCTGCTGCTGTTTCTTCCCCTCTCCGTCGTCCtgctcatcctctccctccccgctccaccctccccctcctccgcAGCGACGCTTCTCACTGTCCCCTGTCCTTATCAGAGAAGCTGCTGCTCAGTTCCTGCCCCCGCCTCCAGTTCCACCCCAATGTGCAGCACCCCCTCCAGTTGTGCCTGCTTCGCCCTCCTCTGCCTGCAGCACCCCGTCCTCTCTTCGCCGAGCCATCCCCCCTCAGCTCCCACGCTGCCACTCCCAGCCCTGCGACCTGCTTCTTCTCAAACCGGGCCTGAAGCGACGGCGTGACCCAGACAGACCATTTGCCCGGCCAGTACTGGATTTCACCAAGATGACTCAGACTCGCAGTACCGACCCCTTGAGTTGTATGGAGCGTGGGAGGCTGGCTTCTGGGGGGGACGTTTGCATGGGCCTTGAGCCTTTCTGGGGGGATTTCAGAGGGTCATGTTCACCAGCAGAGGGGCTGGGAAGGACGAGCATTGGACCTCTAAGCGAGAGTGATgaggagggtgaagagggggaggaagaggaggaccctGATCGAGAAGAGTGTCAGCCGAGTGTCTTTGAGAGGGATTGTACAGAACTAGATTTGAGCCTAATTGAAGAAAATTAAAATCTTGTTAATTGGAGACTGTTTTTCCCCTCTAGCCCCAGCATTCAACACTCCACCCCAGCCCTGCTCCGCTTTCATCAGCAGGGCTCTCAGGAACACGACTTCTCTCTCATGGGATGAGCTTGGGTGTATATATATAATCTCATTGACAACAGTCATGAATTGCCTACTACCAATAAGAACAATTCATGCAAGTAGCCATGGATGCGGTCTTTCCATCAGAGTACATTCCAGAACCAGTTGCTGAAACATTCTTGTGAATAATCTGAATGCTGGAGATGCCAGCTATTCCCGTAGTGTGTGTTGAATGGCTTCTTAATGCGCCCTCAAACAGACTAGGATGGAATGTTAGAAGACCAACAACCTTCTGGTCACTTGCTTTCTTTTACATGACTTTTACAATCCTCTTGATTGTCTTTTTCGGTACAGTAGTAAGAATAGACTTTCTTGAATGATGGTGATGAATTGAATATCTGTGTTTTGTTAAGTTTGATGCAGAAGGGCAGTATGTCATTGCAGTTTTATTCCTGCGGTCCTTATATTTCCTGGTAAACAATCCACATGATTCAGCATAAGCCTTAAGAACAACTTTTTTtctgtaaacaaaaaaaaaaatactatgaAAATGAAATGAATTGTGTAGCAGTTGATATTAGTccttttgttatttattttctgCTGTTTTCTTAATATTTCTTATCTCTAGGACTCGTCCTCTGAATATAGAGATGTATAGACATTGATAATGAATGCACTGTGTTTGACAAGTTAAACAAAAACCTGAAAATGGGAAGCAACCACTGAGGGCACATTGTAATATTGTATTATACAGCGATCATTTTGTTGAAAACAAGTTATGTGTAAAGCTGGTAGCTGACAGACCCGGGGAAGGCCATTGCTGTCTTTTAGAGATGTTTTTTATTGTATGTGTTAAAAAGATGGTGATTTCAAACTCCGTTTGTGTATAAATAAAGTTTATTGGAAATTATTTTACAAGGAAAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU971032 lncRNA downstream 17692 9654725 ~ 9659052 (-) True LOC110533386
TU971043 lncRNA downstream 26254 9649060 ~ 9650490 (-) True G852000
TU971146 lncRNA downstream 154164 9522037 ~ 9522580 (-) True G852081
TU971131 lncRNA downstream 177910 9498246 ~ 9498834 (-) True G852070
TU971127 lncRNA downstream 178990 9491579 ~ 9497754 (-) True G852066
TU971254 lncRNA upstream 13875 9703362 ~ 9773340 (-) False G852157
TU971255 lncRNA upstream 13875 9703362 ~ 9773443 (-) False G852157
TU971252 lncRNA upstream 13922 9703409 ~ 9773443 (-) False G852157
TU971253 lncRNA upstream 13922 9703409 ~ 9773340 (-) False G852157
TU971256 lncRNA upstream 14090 9703577 ~ 9773340 (-) False G852157
XM_021617540.2 mRNA downstream 554 9660229 ~ 9676190 (-) True LOC110533392
XM_021617542.2 mRNA downstream 555 9660229 ~ 9676189 (-) False LOC110533392
XM_021617539.2 mRNA downstream 556 9660229 ~ 9676188 (-) False LOC110533392
XM_021617541.2 mRNA downstream 3848 9660229 ~ 9672896 (-) False LOC110533392
XM_021617526.2 mRNA downstream 20320 9620938 ~ 9656424 (-) False LOC110533386
XM_036989647.1 mRNA upstream 1722 9691209 ~ 9694251 (-) False slbp2
XM_021617558.2 mRNA upstream 1722 9691209 ~ 9694551 (-) False slbp2
XM_021617559.2 mRNA upstream 1722 9691209 ~ 9694551 (-) True slbp2
XM_021617550.2 mRNA upstream 10460 9699947 ~ 9704496 (-) True LOC110533396
XM_021617565.2 mRNA upstream 62956 9752443 ~ 9754417 (-) True nhp2
TU969585 other downstream 1244703 8431531 ~ 8432041 (-) True G850763
TU969056 other downstream 1930120 7741302 ~ 7746624 (-) True G850323
TU968510 other downstream 2233127 7440903 ~ 7443617 (-) False G849864
TU971979 other upstream 772769 10462256 ~ 10462650 (-) True G852802
TU972516 other upstream 1315622 11005109 ~ 11005658 (-) True G853244
TU973046 other upstream 1752765 11442252 ~ 11442590 (-) True G853740
TU973334 other upstream 1892199 11581686 ~ 11583188 (-) True LOC110533345
TU973362 other upstream 1925769 11615256 ~ 11620922 (-) True G854016

Expression Profile