RNA id: XR_005034341.1


Basic Information

Item Value
RNA id XR_005034341.1
length 1615
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC118936914
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 10547571 ~ 10549301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGAGGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGTAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGAGGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGCATGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGAGGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGAGGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGCATGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGCATGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGAGGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGTAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGAGGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGAGGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGAGGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGAGGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGAGGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGAGGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGAGGTGAGGTGGTAGTAAGGCTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGTAAGGAGGAGTATACTACTGAAGGATGTGAGGTGGTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU972010 lncRNA downstream 37578 10509470 ~ 10509995 (-) True G852829
TU972009 lncRNA downstream 39346 10505744 ~ 10508227 (-) True G852828
TU972002 lncRNA downstream 45759 10501135 ~ 10501814 (-) True G852823
TU972000 lncRNA downstream 48306 10498716 ~ 10499267 (-) True G852821
TU971999 lncRNA downstream 52056 10495191 ~ 10495517 (-) True G852820
TU972031 lncRNA upstream 18614 10567915 ~ 10568441 (-) True G852848
TU972040 lncRNA upstream 33918 10583219 ~ 10583635 (-) True G852857
TU972074 lncRNA upstream 63615 10612916 ~ 10613419 (-) True G852888
TU972076 lncRNA upstream 64571 10613872 ~ 10614130 (-) True G852890
TU972295 lncRNA upstream 117026 10666327 ~ 10667020 (-) True G853083
XM_036989677.1 mRNA downstream 392331 10146911 ~ 10155242 (-) False LOC110533324
XM_036989680.1 mRNA downstream 392331 10146911 ~ 10155242 (-) True LOC110533324
XM_021617431.2 mRNA downstream 393626 10146911 ~ 10153947 (-) False LOC110533324
XM_021617432.2 mRNA downstream 393626 10146911 ~ 10153947 (-) False LOC110533324
XM_021617430.2 mRNA downstream 393628 10146911 ~ 10153945 (-) False LOC110533324
XR_005053571.1 mRNA upstream 158241 10707542 ~ 10709076 (-) False LOC118966706
XR_005053572.1 mRNA upstream 158728 10708029 ~ 10709076 (-) False LOC118966706
XR_005053570.1 mRNA upstream 159080 10708381 ~ 10709076 (-) True LOC118966706
XM_021617439.2 mRNA upstream 211381 10760682 ~ 10849833 (-) True LOC110533330
XM_021617448.2 mRNA upstream 439488 10988789 ~ 10993793 (-) True LOC110533336
TU971979 other downstream 84923 10462256 ~ 10462650 (-) True G852802
TU969585 other downstream 2115532 8431531 ~ 8432041 (-) True G850763
TU969056 other downstream 2800949 7741302 ~ 7746624 (-) True G850323
TU968513 other downstream 3103956 7440903 ~ 7443617 (-) False G849864
TU972516 other upstream 455808 11005109 ~ 11005658 (-) True G853244
TU973046 other upstream 892951 11442252 ~ 11442590 (-) True G853740
TU973334 other upstream 1032385 11581686 ~ 11583188 (-) True LOC110533345
TU973362 other upstream 1065955 11615256 ~ 11620922 (-) True G854016
TU973775 other upstream 1235819 11785120 ~ 11785853 (-) True G854402

Expression Profile